BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30330 (615 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_06_0386 + 33555682-33556344,33557138-33557299 141 5e-34 07_01_0756 + 5819367-5820038,5820847-5821005 136 1e-32 03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05 07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 43 2e-04 11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 2.9 06_01_0156 + 1171717-1174140 27 8.9 >03_06_0386 + 33555682-33556344,33557138-33557299 Length = 274 Score = 141 bits (341), Expect = 5e-34 Identities = 65/86 (75%), Positives = 76/86 (88%) Frame = +1 Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 435 +KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEV Sbjct: 72 VKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEV 130 Query: 436 ATAIRCAIILAKLSVLPVRRGYWGTR 513 ATAIR AIILAKLSV+PVRRGYWG + Sbjct: 131 ATAIRGAIILAKLSVVPVRRGYWGNK 156 Score = 74.9 bits (176), Expect = 5e-14 Identities = 31/37 (83%), Positives = 36/37 (97%) Frame = +3 Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 614 G KIG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A Sbjct: 154 GNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 190 Score = 52.4 bits (120), Expect = 3e-07 Identities = 21/36 (58%), Positives = 30/36 (83%) Frame = +2 Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262 ++++++WVPVTKLGRLV+EG+ K+E IYL SL K Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVK 73 >07_01_0756 + 5819367-5820038,5820847-5821005 Length = 276 Score = 136 bits (330), Expect = 1e-32 Identities = 66/100 (66%), Positives = 79/100 (79%) Frame = +1 Query: 214 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 393 K + E L +KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD Sbjct: 61 KIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDG 119 Query: 394 NGHIGLGVKCSKEVATAIRCAIILAKLSVLPVRRGYWGTR 513 +GH+GLGVKC+KEVATAIR AIILAKLSV+PVRRGYWG + Sbjct: 120 DGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159 Score = 76.6 bits (180), Expect = 1e-14 Identities = 32/37 (86%), Positives = 36/37 (97%) Frame = +3 Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 614 G KIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A Sbjct: 157 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 193 Score = 52.4 bits (120), Expect = 3e-07 Identities = 22/36 (61%), Positives = 30/36 (83%) Frame = +2 Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262 ++++++WVPVTKLGRLV+E KI K+E IYL SL K Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVK 76 >03_04_0238 - 19219040-19219218,19220296-19220350,19221606-19221690, 19222068-19222798 Length = 349 Score = 47.2 bits (107), Expect = 1e-05 Identities = 23/75 (30%), Positives = 42/75 (56%) Frame = +1 Query: 301 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRCAIILAKLSV 480 ++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++ Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230 Query: 481 LPVRRGYWGTRSESH 525 + V + T H Sbjct: 231 VTVPLTKYSTFPHRH 245 >07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 Length = 233 Score = 42.7 bits (96), Expect = 2e-04 Identities = 18/31 (58%), Positives = 23/31 (74%) Frame = +3 Query: 519 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVS 611 KPHTV CKV K GSVTVR++ P G+ +V+ Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPPMGSSVVA 77 Score = 37.5 bits (83), Expect = 0.008 Identities = 19/32 (59%), Positives = 23/32 (71%) Frame = +1 Query: 373 FVAIGDNNGHIGLGVKCSKEVATAIRCAIILA 468 FV +GD + HI LGVKC+K AT + AIILA Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31 >11_04_0439 + 17749634-17749858,17750164-17750301,17750770-17750943, 17751099-17751184,17751264-17751525,17751616-17751815, 17753631-17754086,17754198-17754474,17754694-17754828, 17754946-17755026,17756305-17756400,17756676-17756771, 17756844-17756900,17756975-17757043,17757158-17757237, 17758185-17758329,17758422-17758511,17758914-17758994, 17759103-17759198,17759279-17759335,17759417-17759461, 17759547-17759612,17760304-17760350,17762771-17762865, 17763375-17763393,17763438-17763498,17763637-17763660 Length = 1085 Score = 29.1 bits (62), Expect = 2.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -1 Query: 435 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 319 +F+A LHT +M V +E C LS F+ +HD Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693 >06_01_0156 + 1171717-1174140 Length = 807 Score = 27.5 bits (58), Expect = 8.9 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = -2 Query: 329 TGMIFR-TSSFRDGPRKKSMISNSLIV 252 TGMI+ TSS+ D + SM+S SLIV Sbjct: 20 TGMIWNLTSSYTDKSNEASMVSASLIV 46 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,136,234 Number of Sequences: 37544 Number of extensions: 365797 Number of successful extensions: 1100 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1060 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1100 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1478421500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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