Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30330
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 141 5e-34
07_01_0756 + 5819367-5820038,5820847-5821005 136 1e-32
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 43 2e-04
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 2.9
06_01_0156 + 1171717-1174140 27 8.9
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 141 bits (341), Expect = 5e-34
Identities = 65/86 (75%), Positives = 76/86 (88%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 435
+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEV
Sbjct: 72 VKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEV 130
Query: 436 ATAIRCAIILAKLSVLPVRRGYWGTR 513
ATAIR AIILAKLSV+PVRRGYWG +
Sbjct: 131 ATAIRGAIILAKLSVVPVRRGYWGNK 156
Score = 74.9 bits (176), Expect = 5e-14
Identities = 31/37 (83%), Positives = 36/37 (97%)
Frame = +3
Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 614
G KIG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A
Sbjct: 154 GNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 190
Score = 52.4 bits (120), Expect = 3e-07
Identities = 21/36 (58%), Positives = 30/36 (83%)
Frame = +2
Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
++++++WVPVTKLGRLV+EG+ K+E IYL SL K
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVK 73
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 136 bits (330), Expect = 1e-32
Identities = 66/100 (66%), Positives = 79/100 (79%)
Frame = +1
Query: 214 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 393
K + E L +KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD
Sbjct: 61 KIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDG 119
Query: 394 NGHIGLGVKCSKEVATAIRCAIILAKLSVLPVRRGYWGTR 513
+GH+GLGVKC+KEVATAIR AIILAKLSV+PVRRGYWG +
Sbjct: 120 DGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159
Score = 76.6 bits (180), Expect = 1e-14
Identities = 32/37 (86%), Positives = 36/37 (97%)
Frame = +3
Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 614
G KIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A
Sbjct: 157 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 193
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/36 (61%), Positives = 30/36 (83%)
Frame = +2
Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
++++++WVPVTKLGRLV+E KI K+E IYL SL K
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVK 76
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/75 (30%), Positives = 42/75 (56%)
Frame = +1
Query: 301 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRCAIILAKLSV 480
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 481 LPVRRGYWGTRSESH 525
+ V + T H
Sbjct: 231 VTVPLTKYSTFPHRH 245
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +3
Query: 519 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVS 611
KPHTV CKV K GSVTVR++ P G+ +V+
Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPPMGSSVVA 77
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +1
Query: 373 FVAIGDNNGHIGLGVKCSKEVATAIRCAIILA 468
FV +GD + HI LGVKC+K AT + AIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 435 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 319
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>06_01_0156 + 1171717-1174140
Length = 807
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -2
Query: 329 TGMIFR-TSSFRDGPRKKSMISNSLIV 252
TGMI+ TSS+ D + SM+S SLIV
Sbjct: 20 TGMIWNLTSSYTDKSNEASMVSASLIV 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,136,234
Number of Sequences: 37544
Number of extensions: 365797
Number of successful extensions: 1100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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