BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30330 (615 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 137 5e-33 Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 3.5 AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 6.1 AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 6.1 >U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal protein, small subunitprotein 2 protein. Length = 272 Score = 137 bits (332), Expect = 5e-33 Identities = 68/86 (79%), Positives = 75/86 (87%) Frame = +1 Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 435 IKEFEIID L +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEV Sbjct: 85 IKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEV 143 Query: 436 ATAIRCAIILAKLSVLPVRRGYWGTR 513 ATAIR AI+ AKL+V+PVRRGYWG + Sbjct: 144 ATAIRGAIVAAKLAVVPVRRGYWGNK 169 Score = 72.9 bits (171), Expect = 2e-13 Identities = 33/37 (89%), Positives = 33/37 (89%) Frame = +3 Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 614 G KIG PHTVPCKVTGKC SV VRLIPAPRGTGIVSA Sbjct: 167 GNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSA 203 Score = 47.6 bits (108), Expect = 7e-06 Identities = 23/35 (65%), Positives = 25/35 (71%) Frame = +2 Query: 158 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262 E + EW PVTKLGRLV+E KI LE IYL SL K Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIK 86 >Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical protein C30F2.3 protein. Length = 403 Score = 28.7 bits (61), Expect = 3.5 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -1 Query: 498 TSSNW*NRQLSKDNSASNGSG 436 TS+NW N QL NS + GSG Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329 >AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor NHR-121 protein. Length = 461 Score = 27.9 bits (59), Expect = 6.1 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Frame = +3 Query: 312 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSMR 455 +++ CT NTCR + + IC R + G E Q R C++ R Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102 >AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone receptor familyprotein 121 protein. Length = 461 Score = 27.9 bits (59), Expect = 6.1 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Frame = +3 Query: 312 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSMR 455 +++ CT NTCR + + IC R + G E Q R C++ R Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,200,767 Number of Sequences: 27780 Number of extensions: 302559 Number of successful extensions: 1066 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 891 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1065 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1332243108 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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