BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30330 (615 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 155 2e-38 At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 155 3e-38 At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 153 7e-38 At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 153 7e-38 At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 153 7e-38 At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 153 7e-38 At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05 At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 31 0.61 At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 31 0.61 At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containi... 30 1.4 At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.2 At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.3 At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 28 4.3 At3g59390.2 68416.m06624 expressed protein protein CG15643 - Dro... 28 4.3 At3g59390.1 68416.m06623 expressed protein protein CG15643 - Dro... 28 4.3 At2g37930.1 68415.m04656 expressed protein 28 5.7 At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 5.7 At5g10020.1 68418.m01161 leucine-rich repeat transmembrane prote... 27 7.5 At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 27 7.5 At2g25490.1 68415.m03052 F-box family protein (FBL6) contains si... 27 7.5 At3g01450.1 68416.m00069 expressed protein 27 9.9 >At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) Length = 285 Score = 155 bits (376), Expect = 2e-38 Identities = 71/98 (72%), Positives = 83/98 (84%) Frame = +1 Query: 220 RQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 399 +Q + L +KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NG Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129 Query: 400 HIGLGVKCSKEVATAIRCAIILAKLSVLPVRRGYWGTR 513 H+GLGVKCSKEVATAIR AIILAKLSV+PVRRGYWG + Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 167 Score = 76.6 bits (180), Expect = 1e-14 Identities = 32/37 (86%), Positives = 36/37 (97%) Frame = +3 Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 614 G KIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A Sbjct: 165 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 201 Score = 45.6 bits (103), Expect = 3e-05 Identities = 20/34 (58%), Positives = 26/34 (76%) Frame = +2 Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262 ++++WVPVTKLGRLV G I ++E IYL SL K Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVK 83 >At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ribosomal protein S2 - Arabidopsis thaliana, SWISSPROT:RS2_ARATH Length = 276 Score = 155 bits (375), Expect = 3e-38 Identities = 68/86 (79%), Positives = 80/86 (93%) Frame = +1 Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 435 +KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEV Sbjct: 73 VKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEV 132 Query: 436 ATAIRCAIILAKLSVLPVRRGYWGTR 513 ATAIR AIILAKLSV+P+RRGYWG + Sbjct: 133 ATAIRGAIILAKLSVVPIRRGYWGNK 158 Score = 76.6 bits (180), Expect = 1e-14 Identities = 32/37 (86%), Positives = 36/37 (97%) Frame = +3 Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 614 G KIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A Sbjct: 156 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 192 Score = 53.2 bits (122), Expect = 1e-07 Identities = 23/34 (67%), Positives = 29/34 (85%) Frame = +2 Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262 ++++WVPVTKLGRLV+EGKI K+E IYL SL K Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVK 74 >At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar to ribosomal protein S2 GI:430711 from [Drosophila melanogaster] Length = 284 Score = 153 bits (372), Expect = 7e-38 Identities = 69/86 (80%), Positives = 79/86 (91%) Frame = +1 Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 435 +KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140 Query: 436 ATAIRCAIILAKLSVLPVRRGYWGTR 513 ATAIR AIILAKLSV+PVRRGYWG + Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNK 166 Score = 76.6 bits (180), Expect = 1e-14 Identities = 32/37 (86%), Positives = 36/37 (97%) Frame = +3 Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 614 G KIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 200 Score = 48.4 bits (110), Expect = 4e-06 Identities = 22/34 (64%), Positives = 26/34 (76%) Frame = +2 Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262 ++ +WVPVTKLGRLV + KI KLE IYL SL K Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82 >At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar to ribosomal protein S2 GI:939717 from [Urechis caupo] Length = 284 Score = 153 bits (372), Expect = 7e-38 Identities = 69/86 (80%), Positives = 79/86 (91%) Frame = +1 Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 435 +KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140 Query: 436 ATAIRCAIILAKLSVLPVRRGYWGTR 513 ATAIR AIILAKLSV+PVRRGYWG + Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNK 166 Score = 76.6 bits (180), Expect = 1e-14 Identities = 32/37 (86%), Positives = 36/37 (97%) Frame = +3 Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 614 G KIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 200 Score = 48.4 bits (110), Expect = 4e-06 Identities = 22/34 (64%), Positives = 26/34 (76%) Frame = +2 Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262 ++ +WVPVTKLGRLV + KI KLE IYL SL K Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82 >At1g58684.1 68414.m06657 40S ribosomal protein S2, putative Length = 284 Score = 153 bits (372), Expect = 7e-38 Identities = 69/86 (80%), Positives = 79/86 (91%) Frame = +1 Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 435 +KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140 Query: 436 ATAIRCAIILAKLSVLPVRRGYWGTR 513 ATAIR AIILAKLSV+PVRRGYWG + Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNK 166 Score = 76.6 bits (180), Expect = 1e-14 Identities = 32/37 (86%), Positives = 36/37 (97%) Frame = +3 Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 614 G KIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 200 Score = 48.4 bits (110), Expect = 4e-06 Identities = 22/34 (64%), Positives = 26/34 (76%) Frame = +2 Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262 ++ +WVPVTKLGRLV + KI KLE IYL SL K Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82 >At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar to ribosomal protein S2 GI:939717 from (Urechis caupo) Length = 284 Score = 153 bits (372), Expect = 7e-38 Identities = 69/86 (80%), Positives = 79/86 (91%) Frame = +1 Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 435 +KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140 Query: 436 ATAIRCAIILAKLSVLPVRRGYWGTR 513 ATAIR AIILAKLSV+PVRRGYWG + Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNK 166 Score = 76.6 bits (180), Expect = 1e-14 Identities = 32/37 (86%), Positives = 36/37 (97%) Frame = +3 Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 614 G KIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAA 200 Score = 48.4 bits (110), Expect = 4e-06 Identities = 22/34 (64%), Positives = 26/34 (76%) Frame = +2 Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262 ++ +WVPVTKLGRLV + KI KLE IYL SL K Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82 >At2g33800.1 68415.m04147 ribosomal protein S5 family protein contains Pfam profiles PF03719: Ribosomal protein S5, C-terminal domain, PF00333: Ribosomal protein S5, N-terminal domain Length = 303 Score = 46.8 bits (106), Expect = 1e-05 Identities = 19/62 (30%), Positives = 40/62 (64%) Frame = +1 Query: 304 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRCAIILAKLSVL 483 + V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++ Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208 Query: 484 PV 489 V Sbjct: 209 QV 210 >At5g35970.1 68418.m04332 DNA-binding protein, putative similar to SWISS-PROT:Q60560 DNA-binding protein SMUBP-2 (Immunoglobulin MU binding protein 2, SMUBP-2) [Mesocricetus auratus] Length = 961 Score = 31.1 bits (67), Expect = 0.61 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -2 Query: 350 PARVCFCTGMIFRTSSFRDGPRKKSMISNSLIVKKTSK 237 P R FC+G+ +S + PR+KS +S+ L KK K Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80 >At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:433663) [Arabidopsis thaliana]; myosin my5A (SP:Q02440) {Gallus gallus} Length = 1770 Score = 31.1 bits (67), Expect = 0.61 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Frame = -1 Query: 615 AQTQFQYHEGQESAGLLQNHTCR*PCKGRYVAFRSCTPVTSSNW----*NRQLSKDNSAS 448 A+ +FQY +++A ++Q+ R C+ RY+ + T W +R+L K A+ Sbjct: 838 ARVEFQYRTKRKAAIIIQSQIRRCLCRRRYLRTKKAAITTQCGWRVKVAHRELRKLKMAA 897 Query: 447 NGSGDFLAALHTQTNMTVVVANGNKCLE 364 +G A +T + V CLE Sbjct: 898 KETG---ALQDAKTKLEKEVEELTSCLE 922 >At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 978 Score = 29.9 bits (64), Expect = 1.4 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = +3 Query: 180 LSPNSAVLFAKEKSTNSRAF-TCFLYNQRIRDH 275 L ++ FAKE NS ++ TCF+YN IR + Sbjct: 77 LGTRESLSFAKEVFENSESYGTCFMYNSLIRGY 109 >At3g18530.1 68416.m02357 expressed protein similar to unknown protein GB:AAF24615 from [Arabidopsis thaliana] Length = 297 Score = 28.7 bits (61), Expect = 3.2 Identities = 22/75 (29%), Positives = 33/75 (44%) Frame = -2 Query: 521 LSDLVPQ*PLRTGKTDNLARIIAHRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 342 L L+ Q L++ + A R VA + H +P + P L P N R+R A Sbjct: 163 LDRLLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKAS 221 Query: 341 VCFCTGMIFRTSSFR 297 CF +G + R + R Sbjct: 222 ACF-SGCVPRLEAAR 235 >At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc transporter ZIP2 [Arabidopsis thaliana] gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563 Length = 353 Score = 28.3 bits (60), Expect = 4.3 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +1 Query: 370 AFVAIGDNNGHIGLGVKCSKE 432 AFVA G NN H+G V S+E Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169 >At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat family protein similar to WD-repeat protein mip1 (SP:P87141) [Schizosaccharomyces pombe] Length = 1354 Score = 28.3 bits (60), Expect = 4.3 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -3 Query: 553 LPVTLQGTVCGFPILYPSNLF 491 LP+ LQG + GF + PSN++ Sbjct: 429 LPIVLQGAITGFILPLPSNIY 449 >At3g59390.2 68416.m06624 expressed protein protein CG15643 - Drosophila melanogaster, EMBL:AE003499 Length = 273 Score = 28.3 bits (60), Expect = 4.3 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Frame = +3 Query: 375 CCHWRQQRSYWFGCEVQQGSRHCHSMRYYPC*VVCFTSSKRLL----GYKIGKPHT 530 CC W+ +R GC + S+ C+S + C C S+ LL K+ KP T Sbjct: 69 CCPWKGERFSCHGCNIL--SQCCNSYEF--CVSCCLNPSQTLLEKVVKVKVAKPAT 120 >At3g59390.1 68416.m06623 expressed protein protein CG15643 - Drosophila melanogaster, EMBL:AE003499 Length = 273 Score = 28.3 bits (60), Expect = 4.3 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Frame = +3 Query: 375 CCHWRQQRSYWFGCEVQQGSRHCHSMRYYPC*VVCFTSSKRLL----GYKIGKPHT 530 CC W+ +R GC + S+ C+S + C C S+ LL K+ KP T Sbjct: 69 CCPWKGERFSCHGCNIL--SQCCNSYEF--CVSCCLNPSQTLLEKVVKVKVAKPAT 120 >At2g37930.1 68415.m04656 expressed protein Length = 467 Score = 27.9 bits (59), Expect = 5.7 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = +1 Query: 190 TRPSCSRRKNRQTREHLLVFFTI-KEFEIIDFFLGPSLNDEVLKIM 324 TRP +K +R H L+ FT+ K + F +G + N+ + M Sbjct: 196 TRPPTKEKKQSSSRVHALLQFTLRKGINLFQFVVGDNSNNVLAATM 241 >At2g04050.1 68415.m00386 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile: PF01554 uncharacterized membrane protein family Length = 476 Score = 27.9 bits (59), Expect = 5.7 Identities = 12/18 (66%), Positives = 12/18 (66%) Frame = +3 Query: 525 HTVPCKVTGKCGSVTVRL 578 H VPCK T K G VTV L Sbjct: 11 HLVPCKDTWKSGQVTVEL 28 >At5g10020.1 68418.m01161 leucine-rich repeat transmembrane protein kinase, putative receptor-like protein kinase ERECTA, Arabidopsis thaliana, EMBL:AC004484 Length = 1048 Score = 27.5 bits (58), Expect = 7.5 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 10/93 (10%) Frame = +1 Query: 280 FFLGPSLN--DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGH--------IGLGVKCSK 429 FFL SL E L P + R+ T +KA + +NGH +GL V+ K Sbjct: 753 FFLDVSLKLTAEELSRAPAEVLGRSSHGTLYKATL----DNGHMLTVKWLRVGL-VRHKK 807 Query: 430 EVATAIRCAIILAKLSVLPVRRGYWGTRSESHI 528 + A + L +++P+R YWG R + + Sbjct: 808 DFAREAKKIGSLKHPNIVPLRAYYWGPREQERL 840 >At3g61590.1 68416.m06898 F-box family protein contains weak hit to Pfam PF00646: F-box domain; stamina pistilloidia (Stp) - Pisum sativum, EMBL:AF004843 Length = 411 Score = 27.5 bits (58), Expect = 7.5 Identities = 9/15 (60%), Positives = 13/15 (86%) Frame = +3 Query: 3 LSEPIVQQWRTLLQP 47 +S PI +QWRTL++P Sbjct: 150 VSNPITKQWRTLIEP 164 >At2g25490.1 68415.m03052 F-box family protein (FBL6) contains similarity to grr1 GI:2407790 from [Glycine max] Length = 628 Score = 27.5 bits (58), Expect = 7.5 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +2 Query: 380 PLATTTVILVWV*SAARKSPLPFDALLSLLSCLFYQFEEVTGVQDRKA 523 P + V+ + SA K P+ D L CLF F ++G Q+R A Sbjct: 42 PSKRSRVVAPTIFSAFEKKPVSIDVLPD--ECLFEIFRRLSGPQERSA 87 >At3g01450.1 68416.m00069 expressed protein Length = 326 Score = 27.1 bits (57), Expect = 9.9 Identities = 13/41 (31%), Positives = 17/41 (41%) Frame = -2 Query: 455 AHRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 333 A A+ H +P + P L P N R+R A CF Sbjct: 184 AAEKALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKASTCF 224 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,416,246 Number of Sequences: 28952 Number of extensions: 282701 Number of successful extensions: 806 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 768 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 803 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1236350304 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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