Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30329
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    25   0.71 
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   6.6  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   8.7  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 273 DASENGDATEKKETGVKRKSVALDEETA 356
           +A E     + +  G KRKS++ DEE +
Sbjct: 49  EADEEAPVLKSRSFGRKRKSISSDEENS 76


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 112 VAPEEVTSTEPKESPVKKSPAKKVEAAE 195
           VAPEE +S     S +  SPA  + + +
Sbjct: 9   VAPEESSSEVTSSSALVMSPANSLASTD 36


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 255 DAEESNDASENGDATEKKETGVKRKSV 335
           D  +  D  E+ D   KKE   K+K++
Sbjct: 243 DKPKIEDVGEDEDEDTKKEDKKKKKTI 269


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,568
Number of Sequences: 336
Number of extensions: 2532
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)