Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30329
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 30 0.33
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 29 0.76
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 29 0.76
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 28 1.0
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 28 1.0
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 1.3
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 28 1.3
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 27 1.8
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 1.8
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 27 3.1
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 4.1
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 26 4.1
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 5.4
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 26 5.4
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 7.1
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.1
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 7.1
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 25 7.1
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 7.1
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 7.1
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 25 9.4
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 9.4
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 29.9 bits (64), Expect = 0.33
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 103 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSP 243
K+E P E + +P SPV S K E +E K +DEAP+ +P
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPKAAP 530
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 28.7 bits (61), Expect = 0.76
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +1
Query: 121 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGML----KKATMHLRT 288
E+ + EP E+P S KVE A + AP + A L KA L T
Sbjct: 94 EDEVADEPAEAPASTSSTPKVETAAAAAPAATPAPAPAQTSAPAAALPDEPPKALEVLHT 153
Query: 289 VMPQKRKRLV 318
++ QK K+ +
Sbjct: 154 LVAQKLKKSI 163
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 28.7 bits (61), Expect = 0.76
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +1
Query: 94 AVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGMLKKAT 273
++D+ +P ++S K SP K+ +K ++A + TDE P D N T
Sbjct: 592 SLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATT------TDERPSDFIRLNSEESVGT 645
Query: 274 MHLRT 288
LRT
Sbjct: 646 SSLRT 650
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 109 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 249
++ PE+ + + PVKK P+KK + A++N E DE + E
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEE 103
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +1
Query: 100 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGMLKKATMH 279
D+ A +E + E E + + E E ++ T+E P+++P E K +T
Sbjct: 46 DEDVDAVDEKSGEEDVEMDTMEDENENDEDTEQTSEKKETEETPKENPLEKLKQKASTAS 105
Query: 280 LRTVMP 297
V+P
Sbjct: 106 FYDVVP 111
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 76 ATMADAAVDKKEVAPEEVTSTEPKESPVKK-SPAKKVEAAESNGKENGTDEAPEDSPAEN 252
++ D + K + + +S EP + VKK +KK E + S + + E S +E+
Sbjct: 44 SSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSES 103
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +1
Query: 85 ADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 252
++++ + E E V TE K+ +S + E++ + E+G ++ DS +E+
Sbjct: 177 SESSSSESEEEEEVVEKTEEKKEGSSESSSDS-ESSSDSSSESGDSDSSSDSESES 231
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/60 (18%), Positives = 32/60 (53%)
Frame = +1
Query: 130 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGMLKKATMHLRTVMPQKRK 309
++ EP+ + + + ++ E E +EN D+ ++ +N ++++ L + + ++RK
Sbjct: 297 STAEPRAAGEESASEEEEEEEEEEEEENEADDETRENKRQNRLVREFISELESSIQKRRK 356
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 121 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGMLKK 267
+E + KES K++PA+K + + ENGT+E + PA+ +K
Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRAT--ENGTEEGKK--PAKRTRKRK 97
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 163 KSPAKKVEAAESNGKENGTDEAPEDSPAENGMLK 264
K PAK+ + +G+E G + +D PA N + K
Sbjct: 87 KKPAKRTRKRKEDGEEGGKRKRNQD-PANNPLNK 119
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 1.8
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = -1
Query: 290 TVLRCIVAFFSIPFSAGESSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGAT 111
TV+ V S + SS SSV + LLS++ F + F TG S S+ + +G+
Sbjct: 3484 TVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFSTGSSSFSL-TSENGSV 3542
Query: 110 SFLSTAASAIV 78
S S +S+ V
Sbjct: 3543 SSSSLVSSSPV 3553
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 112 VAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGMLKKA 270
VAP +TS + V KS VE+ +++ T PED P+ L +A
Sbjct: 288 VAPSFITSDQAATPDVLKSEEAHVESFSKESEKDQT-PIPEDVPSPMDTLSQA 339
Score = 25.8 bits (54), Expect = 5.4
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = +1
Query: 106 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAP----EDSPAENGMLKKAT 273
KE +P + EP+E+P SP V A S +E T AP D A +LK
Sbjct: 254 KEHSPA-TSKHEPEETPA--SPTPSVSA--STSRERSTSVAPSFITSDQAATPDVLKSEE 308
Query: 274 MHLRTVMPQKRK 309
H+ + + K
Sbjct: 309 AHVESFSKESEK 320
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 252 WDA--EESNDASENGDATEKKETGVKRKSV 335
W+A EE A N TEKKET +K +V
Sbjct: 420 WEAALEEPEVAENNEVVTEKKETDIKSDAV 449
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 252 WDAEESNDASENGDATEKKETGVKRKSVAL 341
W A SN+ ++N AT K+ T + + V L
Sbjct: 112 WKANNSNEKAQNKIATNKESTDILPEEVQL 141
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 106 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 252
++V ++TS EPK + KSP +K + ++ T++ DS +N
Sbjct: 973 EQVDSAQLTS-EPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDN 1020
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 261 EESNDASENGDATEKKETGVKRKSVALDEE 350
E+SN A+ NG+ T GV + S +D+E
Sbjct: 52 EDSNKANGNGEETTDGAEGVLQTSEEVDDE 81
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 7.1
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = +1
Query: 121 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDE---APEDSPAENGMLKKATMHLR-- 285
EE + +S V +KKV+ +++GKE+ E ++ + LKK + L+
Sbjct: 108 EEDLVDKSLDSSVSPVSSKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLD 167
Query: 286 TVMPQKRKRLV 318
QKRKR V
Sbjct: 168 DSHTQKRKRKV 178
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 151 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 255
+P+K+ PAK ++ + A SPA NG
Sbjct: 113 TPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNG 147
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.4 bits (53), Expect = 7.1
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -1
Query: 236 SSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGATSFLSTAASAIVA 75
SSG++ VP S+P L L D+ T + + ATSF T S I A
Sbjct: 168 SSGSTGVPKSMPFLMKKYA-LGYDYGTPEFMNHLSTPMVMATSFALTTLSWINA 220
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +1
Query: 76 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 255
A A A + + +V+ + + +PK++PV S A + A N + T E +
Sbjct: 210 AESAAAVIKEDKVSDRKKSKKKPKKTPVSNSTASQ---ASENASDKKTKEKKSSGKQKIA 266
Query: 256 MLKK 267
KK
Sbjct: 267 SKKK 270
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 139 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 252
E +ESP+K P KK + E T + SP E+
Sbjct: 892 ETRESPMKNKPTKKQHKRAFSMFERPTSQKAPLSPVES 929
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 88 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPA 246
+ A KK A E + + + K++ AK++EAA+ N + P+D+PA
Sbjct: 80 EQAAKKKAKAAEAEAAAAARAAAAKEAEAKRLEAAK-----NIVLKEPKDAPA 127
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 522 TFVGADMWM*VEL*WALMHCSKPSIYNLG 436
+F G+ WM E+ MH K I++LG
Sbjct: 562 SFQGSSFWMAPEVVKQTMHTEKTDIWSLG 590
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/57 (21%), Positives = 30/57 (52%)
Frame = +1
Query: 82 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 252
+A+ + +AP + ++ + + VK A+ +E + K+NGT+ + ++ E+
Sbjct: 1273 VAEGLLPASAIAPPKSSNEKKSSNNVKAVEAETKSKSEKSPKKNGTNISDANNKNES 1329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,635
Number of Sequences: 5004
Number of extensions: 40828
Number of successful extensions: 195
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -