Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30329
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g23660.1 68416.m02975 transport protein, putative similar to ... 34 0.094
At5g22650.2 68418.m02647 expressed protein non-consensus AT dono... 33 0.16
At5g22650.1 68418.m02646 expressed protein non-consensus AT dono... 33 0.16
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 33 0.16
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 33 0.22
At1g01490.1 68414.m00065 heavy-metal-associated domain-containin... 31 0.50
At4g00238.1 68417.m00030 DNA-binding storekeeper protein-related... 30 1.2
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 30 1.5
At5g21430.1 68418.m02535 DNAJ heat shock N-terminal domain-conta... 29 2.0
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote... 29 2.7
At3g59990.2 68416.m06698 methionyl aminopeptidase, putative / me... 29 2.7
At3g59990.1 68416.m06697 methionyl aminopeptidase, putative / me... 29 2.7
At5g11980.1 68418.m01401 conserved oligomeric Golgi complex comp... 29 3.5
At4g31880.1 68417.m04531 expressed protein 29 3.5
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P... 29 3.5
At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger) fa... 29 3.5
At1g56660.1 68414.m06516 expressed protein 29 3.5
At1g09520.1 68414.m01067 expressed protein 29 3.5
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 28 4.7
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 28 4.7
At5g19950.3 68418.m02375 expressed protein 28 6.1
At5g19950.2 68418.m02374 expressed protein 28 6.1
At5g19950.1 68418.m02373 expressed protein 28 6.1
At4g39040.2 68417.m05530 expressed protein contains PF01985: Unc... 28 6.1
At4g39040.1 68417.m05529 expressed protein contains PF01985: Unc... 28 6.1
At4g07380.1 68417.m01133 hypothetical protein 28 6.1
At3g24630.1 68416.m03093 hypothetical protein 28 6.1
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran... 28 6.1
At1g04430.1 68414.m00434 dehydration-responsive protein-related ... 28 6.1
At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein ... 27 8.1
At5g03380.1 68418.m00291 heavy-metal-associated domain-containin... 27 8.1
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 27 8.1
At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing ... 27 8.1
At2g45470.1 68415.m05655 fasciclin-like arabinogalactan-protein ... 27 8.1
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 27 8.1
At1g76820.1 68414.m08939 expressed protein 27 8.1
>At3g23660.1 68416.m02975 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 765
Score = 33.9 bits (74), Expect = 0.094
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 320 NTSLFLFCGITVLRCIVAFFSIPFSAGESSGASSVPFSLPLLSA 189
NTS + CG+ C+ FF I S + GA++ F L L++
Sbjct: 444 NTSAWRLCGLDKTTCLTIFFDISSSGSNTPGAANPQFYLQFLTS 487
>At5g22650.2 68418.m02647 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 223
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 136 TEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGM 258
T+PK P + PA++ ++ + + DE+ ED +E GM
Sbjct: 53 TKPKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKGM 93
>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 306
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 136 TEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGM 258
T+PK P + PA++ ++ + + DE+ ED +E GM
Sbjct: 136 TKPKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKGM 176
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 33.1 bits (72), Expect = 0.16
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 103 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGMLKKA 270
KKE + E+ +S+E + P KK PA K+ + + D++ EDS E KKA
Sbjct: 153 KKESSSEDDSSSE--DEPAKK-PAAKIAKPAAKDSSSSDDDSDEDSEDEKPATKKA 205
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 121 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 249
++V + KE VKK P KKVE+++ + E+ +E + PA+
Sbjct: 42 KDVIAAVQKEKAVKKVP-KKVESSDDSDSESEEEEKAKKVPAK 83
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 100 DKKEVAPE--EVTSTEPK--ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 249
+K E APE EV S P E +++PA AAE N EN ++E E++P E
Sbjct: 67 EKSESAPESTEVASEAPAAAEDNAEETPA----AAEENNDENASEEVAEETPDE 116
>At1g01490.1 68414.m00065 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 177
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +1
Query: 82 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGML 261
M D + PE+ EPK+ + P K+ EA + GK+ G E+ E G
Sbjct: 62 MTDIVLVGPAKEPEKEKKEEPKKEGGGEPPKKEGEAPKEEGKKEGEAPKKEEEKKEGGDK 121
Query: 262 KK 267
K+
Sbjct: 122 KE 123
>At4g00238.1 68417.m00030 DNA-binding storekeeper protein-related
contains Pfam PF04504: Protein of unknown function,
DUF573; similar to storekeeper protein GI:14268476
[Solanum tuberosum]
Length = 345
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 148 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGMLKKAT 273
ESP KS KK AAES ++G +E +SPA K+A+
Sbjct: 76 ESPAVKS-GKKEGAAESPAVKSGNNEGATESPAVKSGKKRAS 116
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 112 VAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDS 240
V PEE++ ++PK+S A+K+E N KE T E P D+
Sbjct: 302 VNPEEISESKPKQS--VDEVARKIEGFHIN-KEGKTAEKPSDA 341
>At5g21430.1 68418.m02535 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile: PF00226
DnaJ domain;
Length = 218
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 151 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPA 246
SP + S EA G DEAP++SP+
Sbjct: 44 SPARNSSEVSAEAETEGGSSTAVDEAPKESPS 75
>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
kinase, putative
Length = 654
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 282 QMHRCFLQHPIFSRRIFWGFIGTILFAITFCSFNFLSWRLLD 157
Q H F P+F+ R GF+ T L + F + F S+ + D
Sbjct: 3 QFHFQFYVGPVFTLRPSKGFLSTCLVSFLFVTTTFCSYAIAD 44
>At3g59990.2 68416.m06698 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +1
Query: 88 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGMLKK 267
D AV V S+ KE ++ +KK+E AE +EN +E + + KK
Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66
Query: 268 ATMHLRTVMPQK 303
+ +PQ+
Sbjct: 67 NKSKKKKELPQQ 78
>At3g59990.1 68416.m06697 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +1
Query: 88 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGMLKK 267
D AV V S+ KE ++ +KK+E AE +EN +E + + KK
Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66
Query: 268 ATMHLRTVMPQK 303
+ +PQ+
Sbjct: 67 NKSKKKKELPQQ 78
>At5g11980.1 68418.m01401 conserved oligomeric Golgi complex
component-related / COG complex component-related
similar to SP|Q96MW5 Conserved oligomeric Golgi complex
component 8 {Homo sapiens}; contains Pfam profile
PF04124: Dor1-like family
Length = 569
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 127 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGMLKK 267
+ + + P KSP K + + ENG PE+ AEN K+
Sbjct: 507 ILAASSSQEPSNKSP-KVISTDTKDASENGVASQPEEKQAENPNAKE 552
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Frame = +1
Query: 91 AAVDKKEVAPEEVTSTEPKESPVKKSPAK-----------KVEAAESNGKENGTDEAPED 237
A+ KKE + TS++ K PVK PAK S KE+ ++ E+
Sbjct: 785 ASSKKKEEPSKATTSSKSKSGPVKSVPAKSKTGKGKAKSGSASTPASKAKESASESESEE 844
Query: 238 SPAENGMLKKA 270
+P E KA
Sbjct: 845 TPKEPEPATKA 855
>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family;similar
to HMG I/Y like protein (GI:15706274) [Glycine
max];similar to HMR1 protein (GI:4218141) [Antirrhinum
majus]; similar to high mobility group protein
(GI:1483173) [Canavalia gladiata]
Length = 480
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 88 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAES-NGKENGTDEAPE 234
+A + V P+ + +P+E+ ++ A++ EAAE+ G+E G + E
Sbjct: 416 EALTVTETVEPQVMEEVQPEETAAPQTEAQQTEAAETQGGQEEGQEREGE 465
>At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +1
Query: 73 LATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 252
L T + V + EV P EP+E PV +P VE + N T EA S ++N
Sbjct: 140 LTTCSTCPVCRTEVEPRPRLEPEPREGPVGTAPQLLVET-----RLNLTVEAASSSSSDN 194
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 100 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 249
+K E PEE KE + +K E E +GK+N E E E
Sbjct: 140 EKDESGPEEKNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDESGTEE 189
>At1g09520.1 68414.m01067 expressed protein
Length = 260
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 106 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGMLKKAT 273
KE A + + E E V +K + KE D+ P+ SPA NG K T
Sbjct: 165 KEAALAKKRAREALEQVVMLDAKEKARSVVPKLKEAPVDQKPKLSPASNGATVKET 220
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 100 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEA 228
DKKE EEV S PK KK +K EAA E+ +++
Sbjct: 504 DKKEEVIEEVAS--PKSEKKKKKKSKDTEAAVDAEDESAAEKS 544
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 115 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDS 240
A + TS E K+S KS + +GK+ EAPE++
Sbjct: 215 ATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENN 256
>At5g19950.3 68418.m02375 expressed protein
Length = 441
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +1
Query: 148 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 252
ES VK + +K E++E +G + GT++ + +PA++
Sbjct: 237 ESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADS 271
>At5g19950.2 68418.m02374 expressed protein
Length = 443
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +1
Query: 148 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 252
ES VK + +K E++E +G + GT++ + +PA++
Sbjct: 237 ESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADS 271
>At5g19950.1 68418.m02373 expressed protein
Length = 443
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +1
Query: 148 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 252
ES VK + +K E++E +G + GT++ + +PA++
Sbjct: 237 ESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADS 271
>At4g39040.2 68417.m05530 expressed protein contains PF01985:
Uncharacterised protein family
Length = 280
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 255 DAEESNDASENGDATEKKETGVKRKS 332
D+E S + SE GD EK E K+KS
Sbjct: 121 DSEASEEVSEIGDKEEKTENTKKKKS 146
>At4g39040.1 68417.m05529 expressed protein contains PF01985:
Uncharacterised protein family
Length = 296
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 255 DAEESNDASENGDATEKKETGVKRKS 332
D+E S + SE GD EK E K+KS
Sbjct: 121 DSEASEEVSEIGDKEEKTENTKKKKS 146
>At4g07380.1 68417.m01133 hypothetical protein
Length = 168
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 100 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTD 222
D + + EEV+ E + K K E ++NG++NGT+
Sbjct: 85 DPSQQSNEEVSQEEVMVNEETKEVDKMEEETQTNGEDNGTE 125
>At3g24630.1 68416.m03093 hypothetical protein
Length = 724
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 118 PEEVTSTEPKESPVKKSPAKKVEAAESNG-KENGTDEAPEDSPAENGMLKKATMHLRTVM 294
P+ + + ++ VKK+ + E N +E PE++P+EN +R V
Sbjct: 276 PDILKLSSERQEKVKKNSKESPEIVRCNSTREAALQSLPEETPSENPSTIVLIRPMRVVK 335
Query: 295 PQ 300
P+
Sbjct: 336 PE 337
>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
methyltransferase family protein similar to
N2,N2-dimethylguanosine tRNA methyltransferase [Homo
sapiens] GI:11066198; contains Pfam profile PF02005:
N2,N2-dimethylguanosine tRNA methyltransferase
Length = 599
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +1
Query: 103 KKEVAPEEVTSTEPKESPVKK--SPAKKVEAAESNGKENGTDE-APEDSPA 246
K+E + T P ++K S A K E NG NG E A ED P+
Sbjct: 51 KQEHEAKSSKRTRPASKVIEKDASEASKEETPSENGMNNGDHEVASEDGPS 101
>At1g04430.1 68414.m00434 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 623
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -1
Query: 278 CIVAFFS---IPFSAGESSGASSVPFSLPLLSAASTFLAGDFLTGDS 147
C+VA F + S GAS++ + L S++L+GD GD+
Sbjct: 19 CVVALFVCFLFMYYGSSSQGASALEYGRSLRKLGSSYLSGDDDNGDT 65
>At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein
similar to SP|Q01205 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Rattus norvegicus}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 464
Score = 27.5 bits (58), Expect = 8.1
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Frame = +1
Query: 73 LATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEA---AESNGKENGTDEAPEDSP 243
++T ADA VAP E +P P + KVE+ AE + P
Sbjct: 167 ISTSADAV---SHVAPSEKAPEKPAPKPSPPAEKPKVESTKVAEKPKAPSPPPPPPSKQS 223
Query: 244 AENGMLKKATMHLRTVMPQKRKRLVLR 324
A+ L R M + RKR+ R
Sbjct: 224 AKEPQLPPKDRERRVPMTRLRKRVATR 250
>At5g03380.1 68418.m00291 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP2
[GI:4097545]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 392
Score = 27.5 bits (58), Expect = 8.1
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Frame = +1
Query: 82 MADAAVDKKEVAPEEVTSTEPKESPV-KKSPAKKVEAA--------ESNGKENGTDEA-P 231
++ A KKE P E K SP ++ PA+K AA E KE G +A P
Sbjct: 89 VSTVAPPKKETPPSS-GGAEKKPSPAAEEKPAEKKPAAVEKPGEKKEEKKKEEGEKKASP 147
Query: 232 EDSPAENGMLKKATMHLRTVMPQKRKRLV 318
P E+ ++ K +H K KR+V
Sbjct: 148 PPPPKESTVVLKTKLHCEG-CEHKIKRIV 175
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +1
Query: 139 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGMLKKATMHLRTVMPQKRKRL 315
EPK+ +E+ +S+ +ENG ED +G ++ +KRKRL
Sbjct: 31 EPKKRRKVSYDDDDIESVDSDAEENGFTGGDEDGRRVDGEVEDEDEFADETAGEKRKRL 89
>At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing
protein similar to CXC domain containing TSO1-like
protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427, CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425;
contains Pfam profile PF03638: Tesmin/TSO1-like CXC
domain
Length = 639
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 33 FYSLFKLFHFFNLPCNNGRRSRRQEGSCT 119
FYSL F++ CNN +EGSC+
Sbjct: 229 FYSLASEPQQFSIYCNNSNYVEEREGSCS 257
>At2g45470.1 68415.m05655 fasciclin-like arabinogalactan-protein
(FLA8)
Length = 420
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 106 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 252
K +P + EP +P SPA ++ TDE+PE +P+++
Sbjct: 334 KSKSPSPAPAPEPVTAPTP-SPADAPSPTAASPPAPPTDESPESAPSDS 381
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 255 DAEESNDASENGDATEKKET 314
D+ E+N+ASE+GD E K T
Sbjct: 282 DSVEANNASEDGDTVEDKNT 301
>At1g76820.1 68414.m08939 expressed protein
Length = 266
Score = 27.5 bits (58), Expect = 8.1
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +1
Query: 82 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVE--AAESNGKENGTDEA-PED-SPAE 249
+ ++A KK + T ++ + K A+ E AA E D+A PE +P E
Sbjct: 167 LVESARSKKHKKKNKSGRTLQEDDDLDKLLAELGETPAAGKPASEEEKDQAQPEPVAPVE 226
Query: 250 NGMLKKATMHLRTVMPQKRKR 312
N K+ LR + P+KRKR
Sbjct: 227 NTGEKEKRRLLRLLQPRKRKR 247
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,667,054
Number of Sequences: 28952
Number of extensions: 210516
Number of successful extensions: 904
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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