Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30327
(471 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 111 4e-26
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 111 4e-26
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 33 0.017
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 27 1.9
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.8
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 25 5.8
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 5.8
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch... 25 7.7
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 111 bits (268), Expect = 4e-26
Identities = 54/84 (64%), Positives = 62/84 (73%)
Frame = +3
Query: 3 AFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTXNVSIRGRIL 182
AFQKQ +F N K G R R +K+VGLGFKTP EAI G Y+DKKCPF VSIRGRIL
Sbjct: 12 AFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRIL 68
Query: 183 TGVVQKMKMQRTIVIRRDYLHYLP 254
TG V KM RTI+IRR+YLH++P
Sbjct: 69 TGTVVSTKMHRTIIIRREYLHFIP 92
Score = 78.6 bits (185), Expect = 4e-16
Identities = 32/48 (66%), Positives = 43/48 (89%)
Frame = +2
Query: 254 QYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 397
+YNR+EKRH+N++ H+SP FR + GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 93 KYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 111 bits (268), Expect = 4e-26
Identities = 54/84 (64%), Positives = 62/84 (73%)
Frame = +3
Query: 3 AFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTXNVSIRGRIL 182
AFQKQ +F N K G R R +K+VGLGFKTP EAI G Y+DKKCPF VSIRGRIL
Sbjct: 12 AFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRIL 68
Query: 183 TGVVQKMKMQRTIVIRRDYLHYLP 254
TG V KM RTI+IRR+YLH++P
Sbjct: 69 TGTVVSTKMHRTIIIRREYLHFIP 92
Score = 78.6 bits (185), Expect = 4e-16
Identities = 32/48 (66%), Positives = 43/48 (89%)
Frame = +2
Query: 254 QYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 397
+YNR+EKRH+N++ H+SP FR + GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 93 KYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 33.5 bits (73), Expect = 0.017
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 326 IGDIVTIGECRPLSKTVRFNVLKV 397
+GD VTI CRP S T RF ++K+
Sbjct: 51 VGDAVTIQPCRPRSATKRFEIIKI 74
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 212 ENYRDPPRLPSLPTQYNRFEKRHRNMSVHLSPCFRD 319
E+ D RL L R EK+HR +++ P RD
Sbjct: 17 ESALDEERLEVLRWMKEREEKKHRQLALQYDPIVRD 52
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -2
Query: 227 DHDSSLHL--HFLNDAGEDAAADRNVXSEGTLLVNVGT 120
+H +H+ H L D + + DRN +EGT N T
Sbjct: 128 NHKLEIHVYKHILPDLPQSSEVDRNSETEGTREENSNT 165
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 123 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 25
YP W+ +++ CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 320 VEIGDIVTIGECRPLSKTVRFNVL 391
V +GDIVTI C + R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137
>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 7.7
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +3
Query: 6 FQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEG-TYIDKKCPFTXNVSIRGRIL 182
+ K T F N+ G K M K G+ A G T+ID P I G+I+
Sbjct: 163 YHKHVTAF-NKAGEEKMGVMDELKKRGMKSLNEIFAEAGATFIDPPNPNVNFTQIDGKIV 221
Query: 183 TGV 191
TGV
Sbjct: 222 TGV 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,901
Number of Sequences: 5004
Number of extensions: 34307
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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