Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30327
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 111 4e-25
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 111 4e-25
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 109 8e-25
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 108 3e-24
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 106 8e-24
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 102 1e-22
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 32 0.27
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 29 1.4
08_02_0383 - 16539472-16539633,16543044-16543205 29 1.9
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 111 bits (266), Expect = 4e-25
Identities = 57/103 (55%), Positives = 69/103 (66%), Gaps = 5/103 (4%)
Frame = +3
Query: 3 AFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTXNVSI 167
AF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFT VSI
Sbjct: 8 AFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSI 67
Query: 168 RGRILTGVVQKMKMQRTIVIRRDYLHYLPNTIGSRNGTGICPC 296
RGRI+ G KM RTI++RR+YLH++ R G + PC
Sbjct: 68 RGRIIAGTCHSAKMNRTIIVRRNYLHFVKKY--QRQGANLPPC 108
Score = 71.7 bits (168), Expect = 3e-13
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = +2
Query: 263 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 397
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 109 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 111 bits (266), Expect = 4e-25
Identities = 57/103 (55%), Positives = 69/103 (66%), Gaps = 5/103 (4%)
Frame = +3
Query: 3 AFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTXNVSI 167
AF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFT VSI
Sbjct: 8 AFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSI 67
Query: 168 RGRILTGVVQKMKMQRTIVIRRDYLHYLPNTIGSRNGTGICPC 296
RGRI+ G KM RTI++RR+YLH++ R G + PC
Sbjct: 68 RGRIIAGTCHSAKMNRTIIVRRNYLHFVKKY--QRQGANLPPC 108
Score = 71.7 bits (168), Expect = 3e-13
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = +2
Query: 263 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 397
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 109 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 109 bits (263), Expect = 8e-25
Identities = 60/114 (52%), Positives = 73/114 (64%), Gaps = 5/114 (4%)
Frame = +3
Query: 3 AFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTXNVSI 167
AF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFT VSI
Sbjct: 8 AFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSI 67
Query: 168 RGRILTGVVQKMKMQRTIVIRRDYLHYLPNTIGSRNGTGICPCICRLASGTWRL 329
RGRI+ G KM RTI++RR+YLH++ N G C+ R T+RL
Sbjct: 68 RGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNNYGFYLCM-RRGIPTFRL 120
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 108 bits (259), Expect = 3e-24
Identities = 56/103 (54%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
Frame = +3
Query: 3 AFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTXNVSI 167
AF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFT VSI
Sbjct: 8 AFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSI 67
Query: 168 RGRILTGVVQKMKMQRTIVIRRDYLHYLPNTIGSRNGTGICPC 296
RGRI+ G KM RTI++RR+YLH++ N G C
Sbjct: 68 RGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNNYGFYLC 110
Score = 71.7 bits (168), Expect = 3e-13
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = +2
Query: 263 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 397
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 124 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 167
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 106 bits (255), Expect = 8e-24
Identities = 54/88 (61%), Positives = 61/88 (69%), Gaps = 5/88 (5%)
Frame = +3
Query: 3 AFQKQATVFLNRKGGMKRKDM-----RHHKNVGLGFKTPREAIEGTYIDKKCPFTXNVSI 167
AF KQ VFL K K K R KN+GLGFKTPREAIEGTYIDKKCPFT VSI
Sbjct: 8 AFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSI 67
Query: 168 RGRILTGVVQKMKMQRTIVIRRDYLHYL 251
RGRI+ G KM RTI++RR+YLH++
Sbjct: 68 RGRIIAGTCHSAKMNRTIIVRRNYLHFV 95
Score = 70.1 bits (164), Expect = 8e-13
Identities = 32/44 (72%), Positives = 37/44 (84%)
Frame = +2
Query: 266 FEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 397
+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 108 YEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 150
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 102 bits (245), Expect = 1e-22
Identities = 49/84 (58%), Positives = 59/84 (70%), Gaps = 4/84 (4%)
Frame = +3
Query: 12 KQATVFLNRKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTXNVSIRGRI 179
+Q F +K G +K R KN+GLGFKTPREAIEGTYIDKKCPFT VSIRGRI
Sbjct: 3 EQVLDFSPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI 62
Query: 180 LTGVVQKMKMQRTIVIRRDYLHYL 251
+ G KM RTI++RR+YLH++
Sbjct: 63 IAGTCHSAKMNRTIIVRRNYLHFV 86
Score = 74.5 bits (175), Expect = 4e-14
Identities = 33/48 (68%), Positives = 40/48 (83%)
Frame = +2
Query: 254 QYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 397
+Y R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNV+KV
Sbjct: 88 KYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVIKV 134
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 368 WTKVCIRRSLQYHQSPRP*SKATNARTYSCAVSRTY 261
W C RR Y +SP P + R+YS + SR+Y
Sbjct: 129 WKNRCYRRGRSYSRSPSPRRGRSRGRSYSRSRSRSY 164
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 134 VNVGTLNRLSGSFEA*TNILMVTHVLPLHATFPVQENGGLFLKR 3
++ G L ++SGSF+ T++ + LPL+ V E FL+R
Sbjct: 772 ISEGELKQISGSFKGTTSLRTLLMELPLYRGLEVLELRSFFLER 815
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 257 YNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 397
YNR+ KR H D IGD V + RPLSK + V ++
Sbjct: 30 YNRYVKRTSKFMAHDET--EDCNIGDRVKLDPSRPLSKRKHWVVAEI 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,193,274
Number of Sequences: 37544
Number of extensions: 233602
Number of successful extensions: 529
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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