Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30327
         (471 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             121   3e-28
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         34   0.052
SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)                29   1.9  
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  121 bits (291), Expect = 3e-28
 Identities = 63/99 (63%), Positives = 74/99 (74%), Gaps = 16/99 (16%)
 Frame = +3

Query: 3   AFQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------REAIEGTYID 134
           A+QKQA +F NRK  +    K+KD+R  +NVGLGFKTP            REAIEGTYID
Sbjct: 8   AYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIEGTYID 67

Query: 135 KKCPFTXNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYL 251
           KKCPFT NVSIRGRILTG+ + MKM+RTI+IRRDYLHY+
Sbjct: 68  KKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYI 106



 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 35/48 (72%), Positives = 45/48 (93%)
 Frame = +2

Query: 254 QYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 397
           +YNRFEKRH+N++ H SPCFRD+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 108 KYNRFEKRHKNLAAHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKV 155


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 34.3 bits (75), Expect = 0.052
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +2

Query: 329 GDIVTIGECRPLSKTVRFNVLKV 397
           GD+V I ECRPLSK  +FNV ++
Sbjct: 29  GDVVRIKECRPLSKMKKFNVEEI 51


>SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
          Length = 522

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 206 DAENYRDPPRLPSLPTQYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE-CRPLSKTVRF 382
           D +N++ PP    LP +++   KR R    HL    R +    +    E C  +  ++++
Sbjct: 277 DGQNFQGPPTSTVLPRRHSGDRKRQRRTPYHLEEVLRRLHANGLTAQREKCEFMQPSLKY 336


>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 132 QCRYPQSPLWEF*SLNQHSYGDACP 58
           +C   QS LWE  SL QH Y +  P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 322 HVPEARRQMHGHIPVPFLEP 263
           HV +A R  HG++P+P L P
Sbjct: 82  HVDQACRSFHGNLPLPVLAP 101


>SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 236 LPSLPTQYNRFEKRHRNMSVHLSPCF 313
           LPSL   Y R E  H  +SVHL P F
Sbjct: 162 LPSLCESYIRGEICHDCLSVHLCPAF 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,924,662
Number of Sequences: 59808
Number of extensions: 268045
Number of successful extensions: 620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)