Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30327
         (471 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   112   1e-25
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           109   7e-25
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           105   1e-23
At5g53780.1 68418.m06683 hypothetical protein contains Pfam prof...    31   0.39 
At4g35720.1 68417.m05069 expressed protein contains Pfam profile...    30   0.91 
At4g26980.1 68417.m03882 expressed protein                             28   3.7  
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    27   4.8  
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    27   6.4  
At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related prot...    27   8.5  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  112 bits (269), Expect = 1e-25
 Identities = 56/88 (63%), Positives = 64/88 (72%), Gaps = 5/88 (5%)
 Frame = +3

Query: 3   AFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPFTXNVSI 167
           AF KQ  VFL+ K   K K       R  KN+GLGFKTPREAIEGTYID+KCPFT  VSI
Sbjct: 8   AFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSI 67

Query: 168 RGRILTGVVQKMKMQRTIVIRRDYLHYL 251
           RGRIL+G     KMQRTI++RRDYLH++
Sbjct: 68  RGRILSGTCHSAKMQRTIIVRRDYLHFV 95



 Score = 77.4 bits (182), Expect = 5e-15
 Identities = 35/48 (72%), Positives = 41/48 (85%)
 Frame = +2

Query: 254 QYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 397
           +Y R+EKRH N+  H+SPCFR V+ GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 97  KYRRYEKRHSNIPAHVSPCFR-VKEGDRVTIGQCRPLSKTVRFNVLKV 143


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  109 bits (263), Expect = 7e-25
 Identities = 54/88 (61%), Positives = 62/88 (70%), Gaps = 5/88 (5%)
 Frame = +3

Query: 3   AFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPFTXNVSI 167
           AF KQ  VFL+ K   K K       R  KN+GLGFKTPREAI+G Y+DKKCPFT  VSI
Sbjct: 8   AFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSI 67

Query: 168 RGRILTGVVQKMKMQRTIVIRRDYLHYL 251
           RGRIL G     KMQRTI++RRDYLH++
Sbjct: 68  RGRILAGTCHSAKMQRTIIVRRDYLHFV 95



 Score = 74.5 bits (175), Expect = 3e-14
 Identities = 33/48 (68%), Positives = 40/48 (83%)
 Frame = +2

Query: 254 QYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 397
           +Y R+EKRH N+  H+SPCFR V+ GD + IG+CRPLSKTVRFNVLKV
Sbjct: 97  KYQRYEKRHSNIPAHVSPCFR-VKEGDHIIIGQCRPLSKTVRFNVLKV 143


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  105 bits (253), Expect = 1e-23
 Identities = 54/88 (61%), Positives = 62/88 (70%), Gaps = 5/88 (5%)
 Frame = +3

Query: 3   AFQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCPFTXNVSI 167
           AF KQ  VFL+ K  G  KR      R  KN+GLGFKTPREAI+G YID KCPFT  VSI
Sbjct: 8   AFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSI 67

Query: 168 RGRILTGVVQKMKMQRTIVIRRDYLHYL 251
           RGRIL G     KMQRTI++RR+YLH++
Sbjct: 68  RGRILAGTCHSAKMQRTIIVRRNYLHFV 95



 Score = 74.9 bits (176), Expect = 2e-14
 Identities = 34/48 (70%), Positives = 40/48 (83%)
 Frame = +2

Query: 254 QYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 397
           +Y R+EKRH N+  H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 97  KYQRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 143


>At5g53780.1 68418.m06683 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 376

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 297 CTDIFLCRFSNLLYWVGSEGN 235
           C+DI+LCR ++   WVG +GN
Sbjct: 169 CSDIYLCRPNHHSQWVGCDGN 189


>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 325

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 27  FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKK 140
           FL+   G+K K+  HHK  G+  K  ++ IE  + +K+
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKR 240


>At4g26980.1 68417.m03882 expressed protein 
          Length = 343

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 96  KTPREAIEGTYIDKKCPFTXNVSIRGRILTGVVQK 200
           + PREA+    +D+  PF  ++  +  ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein helicase,
            putative 
          Length = 2172

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 233  RLPSLPTQYNRFEKRHRNMSVHLS 304
            RLP  P  YN     HR++S HLS
Sbjct: 1791 RLPQNPNYYNLLGVSHRHLSDHLS 1814


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 323 EIGDIVTIGECRPLSKTVRFNVLKV 397
           ++GD+V + + RP+SKT  F  L V
Sbjct: 99  KVGDVVRLEKSRPISKTKSFVALPV 123


>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein
           2 (PCAT2) contains Pfam domains PF02135: TAZ zinc finger
           and PF00569: Zinc finger, ZZ type; identical to cDNA
           p300/CBP acetyltransferase-related protein 2
           GI:12597460
          Length = 1691

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 248 PTQYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSK 370
           P++Y   +    + SV   P F+D +IG    I + RP+S+
Sbjct: 811 PSKYFEVKAEVSDFSVQTRPGFKDTKIGIAENIPKQRPVSQ 851


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,795,170
Number of Sequences: 28952
Number of extensions: 186892
Number of successful extensions: 395
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)