Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30326X
(481 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 87 1e-18
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 84 1e-17
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 82 4e-17
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 0.28
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 0.64
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 25 4.5
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 7.8
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||... 25 7.8
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 7.8
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 7.8
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 87.0 bits (206), Expect = 1e-18
Identities = 36/56 (64%), Positives = 47/56 (83%)
Frame = +3
Query: 309 EVRKVLQLFRLXQINNGVFIRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 476
+ RK++QL RL QINNGVF++ NKAT ML++ EPY+ +G PNLK+VREL+YKRGF
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGF 161
Score = 59.3 bits (137), Expect = 3e-10
Identities = 31/77 (40%), Positives = 43/77 (55%)
Frame = +2
Query: 23 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 202
SK+ PES+LK + +++++ KK+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 203 EIRLARQARNRGNYYVP 253
+I L R+AR GNYYVP
Sbjct: 70 QIELGRKARAEGNYYVP 86
Score = 35.1 bits (77), Expect = 0.006
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +1
Query: 256 EAKLAFVIRIRGINQVSPKSVKFCNCL 336
E KL FVIRIRGIN + PK+ K L
Sbjct: 88 ETKLVFVIRIRGINNIPPKARKIMQLL 114
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 83.8 bits (198), Expect = 1e-17
Identities = 37/56 (66%), Positives = 45/56 (80%)
Frame = +3
Query: 309 EVRKVLQLFRLXQINNGVFIRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 476
++RKVL+L RL +INN VF+R NKA MLRI EPY+ +G PNL SVREL+YKRGF
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGF 159
Score = 55.2 bits (127), Expect = 5e-09
Identities = 24/70 (34%), Positives = 41/70 (58%)
Frame = +2
Query: 44 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 223
PE +LK ++ + ++ + K ++E FKRAE ++ YR +ER+ IRL R
Sbjct: 15 PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74
Query: 224 ARNRGNYYVP 253
A+N+G+ +VP
Sbjct: 75 AKNKGDIFVP 84
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 82.2 bits (194), Expect = 4e-17
Identities = 33/56 (58%), Positives = 45/56 (80%)
Frame = +3
Query: 309 EVRKVLQLFRLXQINNGVFIRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 476
+ RK++QL RL QINNG+F++ NKA ML++ EPY+ +G PN K+VREL+YKRGF
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGF 160
Score = 62.5 bits (145), Expect = 3e-11
Identities = 31/73 (42%), Positives = 43/73 (58%)
Frame = +2
Query: 44 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 223
PES+LK + +++S+ KK+ I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 224 ARNRGNYYVPGKP 262
AR GNY+VP +P
Sbjct: 76 ARAEGNYFVPHEP 88
Score = 33.9 bits (74), Expect = 0.013
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 256 EAKLAFVIRIRGINQVSPKSVKFCNCL 336
E KL FV+RIRGIN + PK+ K L
Sbjct: 87 EPKLIFVVRIRGINNIPPKARKIMQLL 113
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 29.5 bits (63), Expect = 0.28
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = +2
Query: 125 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGK 259
+++K+ REI ++ E+ +R+K ++ ++ + A N GN + K
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGNKSLESK 195
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 0.64
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +2
Query: 107 TLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGKPNWHLSSES 286
TL + + I + ++ + ++ Y +KERD R Q + P PN L++
Sbjct: 601 TLIKANETIDQLTKMLEEVSDQLR-YSLKERDFFRSLVQENEKLLDMAPATPNSKLNTNL 659
Query: 287 VVSTKFHRS 313
+ T + RS
Sbjct: 660 IEQTSYQRS 668
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 4.5
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 6 SKGRKTVRSCLLYQSQCSSIVRGERLFALGDYRLR*RGVLLPSRRRGKSSRGLNSTSR 179
S+G+ ++C L+Q+ C R R + + G+ LP + K G S R
Sbjct: 18 SRGQPRCQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPEDGEESVQR 75
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 24.6 bits (51), Expect = 7.8
Identities = 8/34 (23%), Positives = 18/34 (52%)
Frame = +2
Query: 158 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGK 259
+A Q ++ + +RL N+ N+++PG+
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 213 SLISSRSLMRYSLTYCSALLKISLFFLM 130
SLI+ RS + YC A L LF+L+
Sbjct: 203 SLINRRSKQDKIIFYCGAFLVFVLFYLI 230
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 24.6 bits (51), Expect = 7.8
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 156 LKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPL 7
LK + L +E + + + NL+V+ +L + T G FL SS P+
Sbjct: 239 LKKAFTKLFSEPTMVNKSINLIVQARQQILSTAYLTALTRGDFLSSSRPI 288
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 7.8
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +2
Query: 164 EQYVKEYRIKERDEIRLARQARNRGNYYVPGKPNWHLSSES 286
++Y++ R++E+ E L +Q +NR YY GK +L++ +
Sbjct: 596 DKYIR--RLREKRE--LEKQYQNRRGYYDVGKDESYLANSA 632
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,266
Number of Sequences: 5004
Number of extensions: 37765
Number of successful extensions: 107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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