Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30326X
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...    93   8e-20
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    93   8e-20
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    63   1e-10
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374...    30   1.1  
05_07_0279 + 28917281-28917400,28917535-28917617,28918171-289183...    27   7.9  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 93.5 bits (222), Expect = 8e-20
 Identities = 40/56 (71%), Positives = 50/56 (89%)
 Frame = +3

Query: 309 EVRKVLQLFRLXQINNGVFIRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 476
           + RK+LQL RL QI NGVF+++NKAT+NMLR  EPY+A+GYPNLKSVREL+YKRG+
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGY 156



 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 26/74 (35%), Positives = 42/74 (56%)
 Frame = +2

Query: 29  KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 208
           K   VPESVLK             +  L  +  A++ ++ IF RA+QY +EY  +E++ +
Sbjct: 7   KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66

Query: 209 RLARQARNRGNYYV 250
           +L R+AR +G +YV
Sbjct: 67  QLKREARMKGGFYV 80



 Score = 35.5 bits (78), Expect = 0.023
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = +1

Query: 250 SREAKLAFVIRIRGINQVSPKSVKFCNCL 336
           S EAKL FV+RIRGIN + PK+ K    L
Sbjct: 81  SPEAKLLFVVRIRGINAMHPKTRKILQLL 109


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 93.5 bits (222), Expect = 8e-20
 Identities = 40/56 (71%), Positives = 50/56 (89%)
 Frame = +3

Query: 309 EVRKVLQLFRLXQINNGVFIRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 476
           + RK+LQL RL QI NGVF+++NKAT+NMLR  EPY+A+GYPNLKSVREL+YKRG+
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGY 155



 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 23/70 (32%), Positives = 41/70 (58%)
 Frame = +2

Query: 41  VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 220
           VPESVL+             +  +  +  +I+ ++ IF RA+QY +EY  +E++ ++L R
Sbjct: 10  VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69

Query: 221 QARNRGNYYV 250
           +AR +G +YV
Sbjct: 70  EARMKGGFYV 79



 Score = 33.5 bits (73), Expect = 0.091
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 250 SREAKLAFVIRIRGINQVSPKSVKFCNCL 336
           S E KL FV+RIRGIN + PK+ K    L
Sbjct: 80  SPEEKLLFVVRIRGINAMHPKTRKILQLL 108


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 24/54 (44%), Positives = 41/54 (75%)
 Frame = +3

Query: 312 VRKVLQLFRLXQINNGVFIRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRG 473
           +R++L+  RL Q+  GVF++   AT+  L + EP+I +G+PNLK+V++L+YK+G
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKG 157


>10_06_0101 +
           10736987-10737100,10737263-10737301,10737397-10737474,
           10737539-10737685,10737781-10737888,10738115-10738449,
           10738572-10739544,10739702-10739980
          Length = 690

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +2

Query: 107 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 247
           TL+ R+  IK KRE+F  KR E  ++E  ++ +  E+ +   A NR   +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198


>05_07_0279 +
           28917281-28917400,28917535-28917617,28918171-28918321,
           28918415-28918514,28918777-28918849,28918968-28919023,
           28919170-28919258,28919426-28919581
          Length = 275

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 227 RNRGNYYVPGKP-NWHLSSESVVST 298
           ++  +Y +P K  +WHLSSE+ +ST
Sbjct: 143 KHHKHYILPSKTLSWHLSSENSIST 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,566,424
Number of Sequences: 37544
Number of extensions: 237838
Number of successful extensions: 539
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)