Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30326X
(481 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 101 2e-22
SB_43038| Best HMM Match : AAA (HMM E-Value=0.84) 29 1.5
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 28 4.6
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29) 27 6.1
SB_27973| Best HMM Match : Fe-ADH (HMM E-Value=5.6e-06) 27 6.1
SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64) 27 8.0
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 101 bits (243), Expect = 2e-22
Identities = 45/56 (80%), Positives = 52/56 (92%)
Frame = +3
Query: 309 EVRKVLQLFRLXQINNGVFIRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 476
+VRK+LQL RL QINNGVF+RLNKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLKSVRELIYKRGY 156
Score = 72.5 bits (170), Expect = 2e-13
Identities = 34/79 (43%), Positives = 49/79 (62%)
Frame = +2
Query: 17 EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKE 196
+D K+P VPE++LK + L ++ K++EIFKRAE+YVKEYR KE
Sbjct: 3 QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62
Query: 197 RDEIRLARQARNRGNYYVP 253
DE+R+ + A+ GN+YVP
Sbjct: 63 VDELRMKKMAKKHGNFYVP 81
Score = 37.5 bits (83), Expect = 0.006
Identities = 19/27 (70%), Positives = 20/27 (74%)
Frame = +1
Query: 256 EAKLAFVIRIRGINQVSPKSVKFCNCL 336
EA+LAFVIRIRGIN VSPK K L
Sbjct: 83 EARLAFVIRIRGINGVSPKVRKILQLL 109
>SB_43038| Best HMM Match : AAA (HMM E-Value=0.84)
Length = 957
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +3
Query: 291 YQPSFTEVRKVLQLFRLXQINNGVFIRLNKATVNMLRIAEPYIAWGYPNLKSVRELVY 464
YQ T + + L + IN G +N++ VN+ R A + YP++KSVR +Y
Sbjct: 231 YQNGTTFFYEQVNLHKTVVINKGTDSIINES-VNLPRRARDSEKFVYPDIKSVRVTIY 287
>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 119 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 244
R AI ++RE+++R E Y + + R+ R R R Y
Sbjct: 16 RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57
>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 119 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 244
R + ++REI++R E Y + + R+ RL R R Y
Sbjct: 27 RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 191 KERDEIRLARQARNRGNYYVP 253
K RD +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503
>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
Length = 482
Score = 27.5 bits (58), Expect = 6.1
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +2
Query: 2 PVKGKEDSKKLP--AVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYV 175
P K KE SK + AV +S+LK + T ++ AI KKR + +Y+
Sbjct: 305 PAK-KESSKHIEKNAVKKSILKAPKRNAKKAATDAEQTTTKK--AIDKKRRRYNSRRRYI 361
Query: 176 KEYRIKERDEIRLARQARNR 235
+ R R R R R
Sbjct: 362 RRRRFTSRRRATRRRYTRRR 381
>SB_27973| Best HMM Match : Fe-ADH (HMM E-Value=5.6e-06)
Length = 324
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 225 HAIVATTTFPGSQIGICHPNPWYQPSF 305
HAI + T P + G C PNP +P++
Sbjct: 96 HAIESFTAIPYKERGPCPPNPNMRPAY 122
>SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1075
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -2
Query: 213 SLISSRSLMRYSLTYCSALLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDS 46
SL SR+ M Y LK++L L+ ++ L S C+L R ++ +S D+
Sbjct: 142 SLAISRNQMELFGLYAGMRLKVALVGLIYKKILNSSRCSLSTVRTGHVINLISNDA 197
>SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64)
Length = 325
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 98 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRG 238
L+ L+ R I+K AE+ +K R+KE D I + +RG
Sbjct: 219 LRQALRERDRLIEKINSAVMSAEEQLKVRRLKEDDSIDQLSRHEHRG 265
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,710,671
Number of Sequences: 59808
Number of extensions: 286818
Number of successful extensions: 708
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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