Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30326X
(481 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 90 7e-19
Z81131-4|CAD01083.1| 415|Caenorhabditis elegans Hypothetical pr... 31 0.33
AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical... 31 0.43
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 29 2.3
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 29 2.3
AL117202-24|CAD27612.1| 565|Caenorhabditis elegans Hypothetical... 29 2.3
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 29 2.3
Z83238-7|CAB05797.1| 313|Caenorhabditis elegans Hypothetical pr... 28 4.0
AF025450-2|AAB70936.3| 350|Caenorhabditis elegans Hypothetical ... 28 4.0
Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical pr... 27 7.0
U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein ... 27 7.0
AL132948-21|CAC51051.2| 453|Caenorhabditis elegans Hypothetical... 27 7.0
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 90.2 bits (214), Expect = 7e-19
Identities = 37/55 (67%), Positives = 48/55 (87%)
Frame = +3
Query: 315 RKVLQLFRLXQINNGVFIRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFA 479
RK LQ+ RL QINNGVF++LNKAT+ +LRI EPY+AWGYPN K++ +L+YKRG+A
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYA 156
Score = 62.5 bits (145), Expect = 2e-10
Identities = 30/79 (37%), Positives = 48/79 (60%)
Frame = +2
Query: 23 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 202
+KK+P VPE+VLK Q + + +KK + FKRAE+YV+EYR +++
Sbjct: 4 TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63
Query: 203 EIRLARQARNRGNYYVPGK 259
+RL R+A +G++YVP +
Sbjct: 64 GLRLKREAEAKGDFYVPAE 82
Score = 33.9 bits (74), Expect = 0.061
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 256 EAKLAFVIRIRGINQVSPKSVK 321
E K+AFV+RIRGINQ+ PK K
Sbjct: 82 EHKVAFVVRIRGINQLHPKPRK 103
>Z81131-4|CAD01083.1| 415|Caenorhabditis elegans Hypothetical
protein T24D1.5 protein.
Length = 415
Score = 31.5 bits (68), Expect = 0.33
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +2
Query: 131 IKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGKPNWHLSSES 286
++++R F+R EQ +++Y + R + + RQ + G NW L S++
Sbjct: 20 VEEQRRAFRRYEQQMEDYELARRIQEQENRQNEGERPDFPNGGGNWDLDSDN 71
>AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical
protein Y73F8A.20 protein.
Length = 541
Score = 31.1 bits (67), Expect = 0.43
Identities = 21/84 (25%), Positives = 37/84 (44%)
Frame = +2
Query: 104 VTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGKPNWHLSSE 283
+T KRR++ I +K+ + ++ + E + KE+D R + N K N SS
Sbjct: 438 ITKKRRNTKITRKQRLLRKVRK--SEEKEKEKDRKRAKKALIKNSNLKKKRKSNSSSSSN 495
Query: 284 SVVSTKFHRSP*SSATV*TXPNKQ 355
T +S +S V P ++
Sbjct: 496 GTTETSSTKSSSTSTKVVDVPKEK 519
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
C05C12.3 protein.
Length = 1694
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 285 PWYQPSFTEVRKVLQLFRLXQINNGVFIRLN 377
PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1360 PWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 285 PWYQPSFTEVRKVLQLFRLXQINNGVFIRLN 377
PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1360 PWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390
>AL117202-24|CAD27612.1| 565|Caenorhabditis elegans Hypothetical
protein Y47D3A.30 protein.
Length = 565
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 431 VSPSNVRLGDT*HIHSSLIQTYKHTIVYLAXSKQLQNFTDFGE 303
++PS RL H H+ L Q +++ I K++Q F GE
Sbjct: 496 LAPSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFFVVCGE 538
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 285 PWYQPSFTEVRKVLQLFRLXQINNGVFIRLN 377
PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1347 PWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377
>Z83238-7|CAB05797.1| 313|Caenorhabditis elegans Hypothetical
protein T08G3.8 protein.
Length = 313
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = -2
Query: 183 YSLTYCSALLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPLT 4
YS+ L+K+S +FL + + +S + ++ R ++++ ++ FL+ PLT
Sbjct: 24 YSMPTVYILIKLSYYFLYRKNKCYSTDLHPVLFRQFMIMQ-IACFFNVCIKFLIFRIPLT 82
Query: 3 G 1
G
Sbjct: 83 G 83
>AF025450-2|AAB70936.3| 350|Caenorhabditis elegans Hypothetical
protein C41H7.5 protein.
Length = 350
Score = 27.9 bits (59), Expect = 4.0
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 137 KKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYV-PGKPNWHLSSESVVSTKFHRS 313
K+ E + E+Y E +DE Q +NR NY + G P+ + S+ SV S K RS
Sbjct: 217 KQEENHENHEEYHVEEVSYAQDENVYEHQQQNRQNYPMHGGSPSSNYSTISVDSVKRRRS 276
>Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical
protein M117.2 protein.
Length = 248
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 125 SAIKKKREIFKRAEQYVKEYRIKERDEI 208
S+I++K E ++ +Q KEYR+K E+
Sbjct: 65 SSIEQKTEGSEKKQQLAKEYRVKVEQEL 92
>U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein
protein.
Length = 248
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 125 SAIKKKREIFKRAEQYVKEYRIKERDEI 208
S+I++K E ++ +Q KEYR+K E+
Sbjct: 65 SSIEQKTEGSEKKQQLAKEYRVKVEQEL 92
>AL132948-21|CAC51051.2| 453|Caenorhabditis elegans Hypothetical
protein Y39B6A.29 protein.
Length = 453
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 114 FSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSF 13
F TC+ L ++ L L L T GT+ SF LS F
Sbjct: 238 FKQTCSALTSKSMLQLFPLFTVLGTSSSFWLSIF 271
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,762,574
Number of Sequences: 27780
Number of extensions: 209120
Number of successful extensions: 578
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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