Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30326X
(481 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 91 5e-19
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 91 5e-19
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 91 5e-19
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 90 8e-19
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 90 8e-19
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 87 6e-18
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 49 1e-06
At2g26690.1 68415.m03201 nitrate transporter (NTP2) identical to... 36 0.011
At3g52860.1 68416.m05825 expressed protein 30 0.93
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 29 1.6
At3g59970.3 68416.m06695 methylenetetrahydrofolate reductase 1 (... 28 2.8
At4g13780.1 68417.m02137 methionine--tRNA ligase, putative / met... 28 3.7
At5g06740.1 68418.m00762 lectin protein kinase family protein co... 27 5.0
At5g02910.1 68418.m00234 F-box family protein similar to ribosom... 27 5.0
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 27 5.0
At2g39300.1 68415.m04825 expressed protein ; expression supporte... 27 6.5
At1g33970.1 68414.m04212 avirulence-responsive protein, putative... 27 6.5
At1g15740.1 68414.m01888 leucine-rich repeat family protein 27 8.7
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 90.6 bits (215), Expect = 5e-19
Identities = 38/56 (67%), Positives = 49/56 (87%)
Frame = +3
Query: 309 EVRKVLQLFRLXQINNGVFIRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 476
+ +K+LQL RL QI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGF 155
Score = 53.2 bits (122), Expect = 9e-08
Identities = 28/77 (36%), Positives = 43/77 (55%)
Frame = +2
Query: 20 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 199
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 200 DEIRLARQARNRGNYYV 250
+ I+L R+A+ +G +YV
Sbjct: 63 ELIQLKREAKLKGGFYV 79
Score = 36.3 bits (80), Expect = 0.011
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 256 EAKLAFVIRIRGINQVSPKSVKFCNCL 336
EAKL F+IRIRGIN + PK+ K L
Sbjct: 82 EAKLLFIIRIRGINAIDPKTKKILQLL 108
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 90.6 bits (215), Expect = 5e-19
Identities = 38/56 (67%), Positives = 49/56 (87%)
Frame = +3
Query: 309 EVRKVLQLFRLXQINNGVFIRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 476
+ +K+LQL RL QI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGF 155
Score = 53.2 bits (122), Expect = 9e-08
Identities = 28/77 (36%), Positives = 43/77 (55%)
Frame = +2
Query: 20 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 199
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 200 DEIRLARQARNRGNYYV 250
+ I+L R+A+ +G +YV
Sbjct: 63 ELIQLKREAKLKGGFYV 79
Score = 36.3 bits (80), Expect = 0.011
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 256 EAKLAFVIRIRGINQVSPKSVKFCNCL 336
EAKL F+IRIRGIN + PK+ K L
Sbjct: 82 EAKLLFIIRIRGINAIDPKTKKILQLL 108
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 90.6 bits (215), Expect = 5e-19
Identities = 38/56 (67%), Positives = 49/56 (87%)
Frame = +3
Query: 309 EVRKVLQLFRLXQINNGVFIRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 476
+ +K+LQL RL QI NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGF 155
Score = 53.2 bits (122), Expect = 9e-08
Identities = 28/77 (36%), Positives = 43/77 (55%)
Frame = +2
Query: 20 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 199
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 200 DEIRLARQARNRGNYYV 250
+ I+L R+A+ +G +YV
Sbjct: 63 ELIQLKREAKLKGGFYV 79
Score = 36.3 bits (80), Expect = 0.011
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 256 EAKLAFVIRIRGINQVSPKSVKFCNCL 336
EAKL F+IRIRGIN + PK+ K L
Sbjct: 82 EAKLLFIIRIRGINAIDPKTKKILQLL 108
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 89.8 bits (213), Expect = 8e-19
Identities = 38/56 (67%), Positives = 49/56 (87%)
Frame = +3
Query: 309 EVRKVLQLFRLXQINNGVFIRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 476
+ +K+LQL RL QI NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGY 158
Score = 55.2 bits (127), Expect = 2e-08
Identities = 27/70 (38%), Positives = 40/70 (57%)
Frame = +2
Query: 41 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 220
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72
Query: 221 QARNRGNYYV 250
+A+ +G +YV
Sbjct: 73 EAKLKGGFYV 82
Score = 36.3 bits (80), Expect = 0.011
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 256 EAKLAFVIRIRGINQVSPKSVKFCNCL 336
EAKL F+IRIRGIN + PK+ K L
Sbjct: 85 EAKLLFIIRIRGINAIDPKTKKILQLL 111
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 89.8 bits (213), Expect = 8e-19
Identities = 38/56 (67%), Positives = 49/56 (87%)
Frame = +3
Query: 309 EVRKVLQLFRLXQINNGVFIRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 476
+ +K+LQL RL QI NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGY 153
Score = 55.2 bits (127), Expect = 2e-08
Identities = 27/70 (38%), Positives = 40/70 (57%)
Frame = +2
Query: 41 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 220
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67
Query: 221 QARNRGNYYV 250
+A+ +G +YV
Sbjct: 68 EAKLKGGFYV 77
Score = 36.3 bits (80), Expect = 0.011
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 256 EAKLAFVIRIRGINQVSPKSVKFCNCL 336
EAKL F+IRIRGIN + PK+ K L
Sbjct: 80 EAKLLFIIRIRGINAIDPKTKKILQLL 106
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 87.0 bits (206), Expect = 6e-18
Identities = 36/56 (64%), Positives = 49/56 (87%)
Frame = +3
Query: 309 EVRKVLQLFRLXQINNGVFIRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 476
+ +K+LQL RL QI NGVF+++NKAT+NMLR EPY+ +G+PNLKSV+EL+YKRG+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGY 153
Score = 51.6 bits (118), Expect = 3e-07
Identities = 28/70 (40%), Positives = 38/70 (54%)
Frame = +2
Query: 41 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 220
VPESVLK Q + + ++ IFKRAEQY KEY KE++ I L R
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67
Query: 221 QARNRGNYYV 250
+A+ +G +YV
Sbjct: 68 EAKLKGGFYV 77
Score = 36.3 bits (80), Expect = 0.011
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 256 EAKLAFVIRIRGINQVSPKSVKFCNCL 336
EAKL F+IRIRGIN + PK+ K L
Sbjct: 80 EAKLLFIIRIRGINAIDPKTKKILQLL 106
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 49.2 bits (112), Expect = 1e-06
Identities = 19/55 (34%), Positives = 34/55 (61%)
Frame = +3
Query: 309 EVRKVLQLFRLXQINNGVFIRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRG 473
+ +++L +L + GVF + + L +PY+ +GYPN KSV++L+YK+G
Sbjct: 102 KTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKG 156
Score = 37.1 bits (82), Expect = 0.006
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = +2
Query: 14 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 193
+E++K L +PE VLK + S KKK KR E +V E+R K
Sbjct: 3 EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62
Query: 194 ERDEIRLARQAR 229
E D IR+ ++ +
Sbjct: 63 EVDMIRMKQRVK 74
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 256 EAKLAFVIRIRGINQVSPKSVKFCNCL 336
++ L F+IRI+G N + PK+ + N L
Sbjct: 84 KSDLVFIIRIQGKNDMHPKTKRILNNL 110
>At2g26690.1 68415.m03201 nitrate transporter (NTP2) identical to
nitrate transporter (ntp2) [Arabidopsis thaliana]
GI:4490321
Length = 577
Score = 36.3 bits (80), Expect = 0.011
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 219 DKHAIVATTTFPGSQIGICHPNPWYQPSFTEVRKVLQLFRLXQI 350
DK AIVA F + G+ PNPW S T+V +V + RL I
Sbjct: 292 DKAAIVAEGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPI 335
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.9 bits (64), Expect = 0.93
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 98 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 208
++ LK + IKK +F+ +++ VKE K RDE+
Sbjct: 117 MEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 194 ERDEIRLARQARNRGNYYVPGKPNWHLSSESVVSTKFHRS 313
ER + AR+ G+Y++P LS E VST RS
Sbjct: 336 ERQALNEAREGEKNGHYHMPETRGLCLSEEQTVSTVRKRS 375
>At3g59970.3 68416.m06695 methylenetetrahydrofolate reductase 1
(MTHFR1) identical to methylenetetrahydrofolate
reductase MTHFR1 [Arabidopsis thaliana] GI:5911425
Length = 592
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 264 IGICHPNPWYQPSFTEVRKVLQLFRLXQINNGVFIRLN-KATVNMLRIAEPYIAWGYP 434
IG +PW + + + +L +IN+ F+ +N + +VN + P I WG P
Sbjct: 403 IGNLKSSPWSELDGLQPETKIINEQLGKINSNGFLTINSQPSVNAAKSDSPAIGWGGP 460
>At4g13780.1 68417.m02137 methionine--tRNA ligase, putative /
methionyl-tRNA synthetase, putative / MetRS, putative
similar to methionyl-tRNA synthetase [Oryza sativa]
GI:4091008; contains Pfam profiles PF00133: tRNA
synthetases class I (I, L, M and V), PF01588: Putative
tRNA binding domain
Length = 797
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 143 REIFKRAEQYVKEY-----RIKERDEIRLARQARNRGNYYVPGKPNWHLSSE 283
+ + ++ E++V EY ++K + ++ A + GNYY+ W L E
Sbjct: 441 KSLAEKVEKFVAEYVEAMEKVKLKQGLKTAMLISSEGNYYLQASQFWKLYKE 492
>At5g06740.1 68418.m00762 lectin protein kinase family protein
contains Legume lectins beta-chain signature,
PROSITE:PS00307 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 652
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 264 IGICHPNPWYQPSFTEVRKVL 326
+ CHPNP +PS V KVL
Sbjct: 586 LACCHPNPNQRPSMKTVLKVL 606
>At5g02910.1 68418.m00234 F-box family protein similar to ribosomal
RNA apurinic site specific lyase [Triticum aestivum]
GI:6505722; contains F-box domain Pfam:PF00646
Length = 458
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 377 IQTYKHTIVYLAXSKQLQNFTDFGETWLIPRIRMTNANLASRERSSC 237
++ YK + S Q F D G LIPR ++ +L + S+C
Sbjct: 117 VRNYKFPDFFYTNSSVKQLFVDSGSVHLIPRCTVSWTSLKNLSLSNC 163
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin
family
Length = 1919
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 110 LKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRG-----NYYVPGKPNWHL 274
++RR S ++ EI A +Y + R+ +DE + ++ + +G Y P +PN L
Sbjct: 1255 MRRRPSQVETDEEIEDEATEYAELCRLLMQDEDQKKKKKKMKGVGEGMGSYPPPRPNIAL 1314
Query: 275 SS 280
S
Sbjct: 1315 QS 1316
>At2g39300.1 68415.m04825 expressed protein ; expression supported
by MPSS
Length = 768
Score = 27.1 bits (57), Expect = 6.5
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 14 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 193
+ED +++ + +LK L+ L RRSS K E FK E+ ++E R++
Sbjct: 324 REDIRRVKNDWDLLLKRLEKEKTELQVQLETELDRRSSEWTSKVESFKVEEKRLRE-RVR 382
Query: 194 ERDEIRLARQ 223
E E ++ Q
Sbjct: 383 ELAEHNVSLQ 392
>At1g33970.1 68414.m04212 avirulence-responsive protein, putative /
avirulence induced gene protein, putative / AIG protein,
putative similar to SP|P54120 AIG1 protein {Arabidopsis
thaliana}; contains Pfam profile PF04548: AIG1 family
Length = 342
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 113 KRRSSAIKKKREIFKRAEQYVKEYRIK 193
KR S IKK RE +RAE+ KE + K
Sbjct: 309 KRSSDEIKKLRENLERAEKETKELQKK 335
>At1g15740.1 68414.m01888 leucine-rich repeat family protein
Length = 585
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +1
Query: 274 VIRIRGINQVSPKSVKFCNCLDXAK*TMVCLYV*IRLL*IC 396
++ +R + ++ ++K+CNC+ A + + +R L IC
Sbjct: 229 LVHLRALTKLESLNIKWCNCITDADMEPLSVLTNLRSLQIC 269
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,265,908
Number of Sequences: 28952
Number of extensions: 196679
Number of successful extensions: 520
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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