Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30323
         (735 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    28   0.068
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    26   0.36 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           26   0.36 
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   3.4  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   4.5  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 0.068
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
 Frame = -2

Query: 350 LYRCLSQFSLRIQPHVFDHKICFYGEACSLTRISGICKSFRRMLDEPFH*CNPASRGCYV 171
           LY C S+F+ + Q  ++  K+    +A    +I  +CK  + +   P H  +   +   V
Sbjct: 230 LYTCWSEFTQKTQGQIYGIKVDI-RDAYGNVKIPVLCKLIQSI---PTHLLDSEKKNFIV 285

Query: 170 KRRSPLFIKSLDKIRACGLDKTSKGFITN*SLCNCTCE-YLAVVAR 36
              S  F+    KI      K + G +    L  C CE Y+A + R
Sbjct: 286 DHISNQFVAFRRKIY-----KWNHGLLQGDPLSGCLCELYMAFMDR 326


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 411 NTKAVSPARSTCGEAIRTTPSERARSSNATPRN 509
           NTK V    +  G    T    RA++ NATP N
Sbjct: 296 NTKNVRRKTNPAGVTTTTKGKVRAKTQNATPAN 328


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 411 NTKAVSPARSTCGEAIRTTPSERARSSNATPRN 509
           NTK V    +  G    T    RA++ NATP N
Sbjct: 296 NTKNVRRKTNPAGVTTTTKGKVRAKTQNATPAN 328


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 205 WNGSSSIRRKLLQMPEMRVRLHAS 276
           WN  ++I   +   PE+R  L AS
Sbjct: 105 WNAGNAILAPIAASPELRANLIAS 128


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 224 FVGSFCKCPRCESGYTPL 277
           F+  F  CP CE+  T L
Sbjct: 6   FIRKFVLCPECENPETEL 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,079
Number of Sequences: 336
Number of extensions: 3956
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)