Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30323
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    37   0.003
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom...    36   0.008
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    34   0.018
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        31   0.17 
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    31   0.23 
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    29   0.52 
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    29   0.69 
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    28   1.2  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      27   2.1  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    27   2.8  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    26   6.4  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    26   6.4  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   8.5  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    25   8.5  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
 Frame = +2

Query: 257 ESGYTPLHRSIFYGQIHAAVSLMKIG---LNTDIVDKD---DYKALEHAMLDRHYMYEHE 418
           ESGYT LHR+I+ G + AA  L+       +  I DK+    ++ L   +    +     
Sbjct: 85  ESGYTALHRAIYVGNLEAASLLLSKDPSFRSLRIKDKEGLSPFQFLSRVLSSTIHPVLDL 144

Query: 419 GGQPSEVYVWGSNSNYTLGTGTQQQRNTPE 508
               +E+Y +G+N N TLG    ++ ++PE
Sbjct: 145 PIIGNELYGFGTNVNNTLGIANGKEPSSPE 174



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 147 DKEGRTPLHVAASRGRVALMEWLIKH 224
           D+ GRT LH+A S  + + +  L++H
Sbjct: 49  DRYGRTVLHIAVSENKNSFVRSLLQH 74


>SPBP16F5.05c |||ribosome biogenesis protein
           Nop8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 17/63 (26%), Positives = 35/63 (55%)
 Frame = +3

Query: 87  SDEALASFIKATCSNFVKAFDKEGRTPLHVAASRGRVALMEWLIKHSSEAFANARDASQA 266
           +DE L   I   C   +   D+ G + LH+A++ G +A+++ +I + ++   NA++ S  
Sbjct: 13  ADEELLDEIIEKCPQELSRRDENGNSGLHMASANGHIAVVQKIIPYLNKEVINAQNESGN 72

Query: 267 TRL 275
           T +
Sbjct: 73  TAM 75


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 135 VKAFDKEGRTPLHVAASRGRVALMEWLIKH 224
           V A+DK   TPLH+AA  GR  ++E L+ H
Sbjct: 82  VNAYDKNKNTPLHLAAMAGRQDIVEALLLH 111



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 150 KEGRTPLHVAASRGRVALMEWLIKHSSEAF 239
           K G+T LHVA       L++WL+ + ++ +
Sbjct: 187 KTGQTYLHVATKAKDAELVKWLLDNGADPY 216


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = +3

Query: 135 VKAFDKEGRTPLHVAASRGRVALMEWLIKHSSEAFANARDASQATRL 275
           ++  D +G+TPLH AA+ G++ ++++LI  S  A  N  D+   T L
Sbjct: 134 IRKKDLQGQTPLHRAAAVGKIQVVKYLI--SQRAPLNTSDSYGFTPL 178



 Score = 30.7 bits (66), Expect = 0.23
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 263 GYTPLHRSIFYGQIHAAVSLMKIGLNTDIVDKDDYKALE 379
           G+TPLH ++  G     V L++ G +T   D +++ ALE
Sbjct: 174 GFTPLHFALAEGHPDVGVELVRAGADTLRKDSENHTALE 212



 Score = 29.9 bits (64), Expect = 0.39
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 129 NFVKAFDKEGRTPLHVAASRGRVALMEWLIK 221
           N + A D + RTPLH A S G+V  + +L+K
Sbjct: 28  NSLNAVDDDKRTPLHWACSVGKVNTIYFLLK 58



 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 57  LTSAITKRSISDEALASFIKATCSNFVKAFDKEGRTPLHVAASRGRVALMEWLIKHSSE 233
           L  +I  RS+ D  +   I  +  +      + G+T LH AA +GR+++++ L   + E
Sbjct: 75  LMISINNRSVPDNVIEELINRSDVD-PTITTRGGQTCLHYAAGKGRLSIVQLLCDKAPE 132


>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 257 ESGYTPLHRSIFYGQIHAAVSLMKIGLNTDIVDKD 361
           E+GYTP+H ++ YG       L++ G + +I D+D
Sbjct: 35  ENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQD 69



 Score = 29.5 bits (63), Expect = 0.52
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 141 AFDKEGRTPLHVAASRGRVALMEWLIKHSSEAFANARDASQATRLSI 281
           A D+ G TP+H A S G   L++ L++   +   N RD    T L +
Sbjct: 32  AADENGYTPIHAAVSYGHSDLLKILVERGGD--INIRDQDGETPLFV 76


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 165 PLHVAASRGRVALMEWLIKHSSEAFANARDASQATRLSIEA 287
           P+H AA RG V  + +L++H ++     +       L++ A
Sbjct: 71  PIHWAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLHLAVHA 111


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 263  GYTPLHRSIFYGQIHAAVSLMKIGLNTDIVDKDDYKALE 379
            GYTPLH +  Y      V+L+  G   D++     K ++
Sbjct: 895  GYTPLHYASLYDHKDICVNLLSNGAKPDVIGASGKKPID 933


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 520 FSRNNLSVKQVCLGKFHSVWLTSGPNGNEVWCCGQCGRAGGPHYTALRPTPLKLAEPCV 696
           F++ N+  ++   GKF    L +   G+ + C G  GR+G    +       KL  PC+
Sbjct: 116 FNKKNIGTEEEMKGKFIPR-LKALQKGDCIQCSGNVGRSGSGELSIYATELPKLLSPCL 173


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 359 PCRLYRCLSQFSLRIQPHVFDHKICFYGEACSLTRISGICKSFRRMLDEP 210
           PC L R  S   +R  PH+ D +  F G   S  R+ GI +   + + +P
Sbjct: 4   PCTLIRQFSPLEIRPLPHL-DFQAGFNGIPTSAPRLVGIVQVRSKEIHQP 52


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 239 CKCPRCESGYTPLHR--SIFYGQIHAAVSLMK 328
           C CPRCE+ +T      S + G++  + SLMK
Sbjct: 249 CYCPRCENDHTTKETDGSKWMGRLRNSKSLMK 280


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 434 EVYVWGSNSNYTLGTGTQQQ 493
           +VY WGS  NY +G G   +
Sbjct: 420 KVYSWGSAENYEVGQGDNDE 439


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 472 RNGHAAATQHPGMLTYFSRNN 534
           R G+    Q PG  TY SRNN
Sbjct: 861 RGGNIIPLQQPGYTTYESRNN 881


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 180  ASRGRVALMEWLIKHSSEAFANARDASQATRLSIEA 287
            A  G +AL + L+    ++F NA++  +A +++IEA
Sbjct: 2499 AENGILALGKALLADIPQSFGNAKNLVEALKVNIEA 2534


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 160 RPSLSKALTKFEHVALIKLARASSLIDRFVIALVSTWP 47
           R  L+  + K +H+ LI+   A ++     I++ +TWP
Sbjct: 144 RTGLASKMVKKKHIRLIRALPADAIEYTQTISVDNTWP 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,156
Number of Sequences: 5004
Number of extensions: 63220
Number of successful extensions: 175
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)