Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30321X
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          27   1.9  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    25   5.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   5.8  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   7.6  

>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 297 RIIVQQTNVAEGRPFGRKKIGYLCCIRTI 211
           +   Q   + +G P G    GYLCC  T+
Sbjct: 97  KFTTQSKEMIKGIPKGNPSAGYLCCFDTL 125


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 441 YDAE*IMFLHVSVPCANLPPLR 376
           Y A  + FL+ S+P A+LPPLR
Sbjct: 214 YPAIVVPFLNGSLPQADLPPLR 235


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 89  IFRTWNWVRRCFSGRCMSLGASATGHNLLLLY 184
           +F  W W++ CF    + L   + G + L L+
Sbjct: 246 LFTAWTWIKPCFFNFVILLKRISIGDSQLFLH 277


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 375 DVVGVSLRMVHSRAKTLFTLRHNAIKLLKSTYVFI 479
           D  G   R V +  +  F+LR+N + LL +  VF+
Sbjct: 349 DRTGTGTRSVFAPPQLRFSLRNNTLPLLTTKRVFL 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,312
Number of Sequences: 5004
Number of extensions: 48548
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)