Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30321X
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0068 - 27469929-27471050                                         28   4.4  
01_06_1131 - 34762970-34763458,34765002-34765430                       27   7.7  

>05_07_0068 - 27469929-27471050
          Length = 373

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 95  RTWNWVRRCFSGRCMSLGASATGHNLLLLYS 187
           R + W+ R F   C+ +GA    +NLL  YS
Sbjct: 70  RPFTWLSRRFLAVCLVIGALMGANNLLFAYS 100


>01_06_1131 - 34762970-34763458,34765002-34765430
          Length = 305

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 171 KLWPVAEAPNDMQRPEKHRRTQFQVRNMNSLKTK*VSR 58
           K  P+A  P D  R E+ ++ Q Q+ ++N L  K V R
Sbjct: 150 KAMPLALTPEDDPRKEELKKLQTQLEDINKLAHKQVRR 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,455,089
Number of Sequences: 37544
Number of extensions: 268916
Number of successful extensions: 556
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)