Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30321X
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)                 31   0.85 
SB_4294| Best HMM Match : DUF622 (HMM E-Value=7)                       29   3.4  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         28   6.0  
SB_33336| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
          Length = 826

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -1

Query: 149 LLTTCNVRRSTVEPSSKYGI*IRSKQNKFHDEGLILCILSM 27
           LLTTC +++S  +   +YG+ +  + +K H + L   +++M
Sbjct: 555 LLTTCVIKKSRDDIKRRYGLRVFGRGSKDHSKALATLVINM 595


>SB_4294| Best HMM Match : DUF622 (HMM E-Value=7)
          Length = 360

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 92  FRTWNWVRRCFSGRCMSLGASATG 163
           FR W  + R F+ RC+S G SA G
Sbjct: 51  FREWEQIAREFNKRCISDGVSALG 74


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 32   TKYTVLSLRRETYFVLSEFIFRTWNWVRRCFSGR 133
            T  T+L+     Y     F +R WN+V   ++GR
Sbjct: 3130 TSVTILARVASKYITSKAFRYRAWNYVGTTYNGR 3163


>SB_33336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 186 EYNNNKLWPVAEAPNDMQRPEKHRRTQFQVRNMNSLK 76
           E+ N KL+P+A+AP +     K      ++ ++N  K
Sbjct: 123 EHENEKLFPLADAPGEATGGLKSEHNSLEIPSVNVTK 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,286,804
Number of Sequences: 59808
Number of extensions: 340764
Number of successful extensions: 676
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)