Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30321X
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15360.1 68416.m01948 thioredoxin M-type 4, chloroplast (TRX-...    29   2.1  
At2g41510.1 68415.m05129 FAD-binding domain-containing protein /...    27   6.5  
At1g06140.1 68414.m00645 pentatricopeptide (PPR) repeat-containi...    27   6.5  
At1g03680.1 68414.m00347 thioredoxin M-type 1, chloroplast (TRX-...    27   6.5  
At5g67220.1 68418.m08473 nitrogen regulation family protein simi...    27   8.6  

>At3g15360.1 68416.m01948 thioredoxin M-type 4, chloroplast (TRX-M4)
           nearly identical to SP|Q9SEU6 Thioredoxin M-type 4,
           chloroplast precursor (TRX-M4) {Arabidopsis thaliana}
          Length = 193

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 402 PCANLPPLRQQMLKKFAGYYNFYAI 328
           PC  + P+  Q+ K FAG + FY I
Sbjct: 118 PCRMIHPIVDQLAKDFAGKFKFYKI 142


>At2g41510.1 68415.m05129 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase, Zea mays [gi:3882018] [gi:3441978]
          Length = 575

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 2   LTYPSNRNAWTKYTVLSLRRETYFVLSEFI 91
           L YP N++ W K+T L    E  F L  F+
Sbjct: 432 LIYPVNQSKWKKHTSLITPNEDIFYLVAFL 461


>At1g06140.1 68414.m00645 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 558

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 217 SYTAQISDFLTTKRAALSDVRLLNN---NPCAKCDFFNILDSVKVIIAGKLLEH 369
           S+   +S +  +K    SDV LL N     C   D FN++ ++K  +   LLE+
Sbjct: 74  SWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLEN 127


>At1g03680.1 68414.m00347 thioredoxin M-type 1, chloroplast (TRX-M1)
           nearly identical to SP|O48737 Thioredoxin M-type 1,
           chloroplast precursor (TRX-M1) {Arabidopsis thaliana};
           similar to ESTs gb|T13714, gb|H76398, gb|N37762,
           gb|AA042639, gb|T21104, emb|Z30901
          Length = 179

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 402 PCANLPPLRQQMLKKFAGYYNFYAI 328
           PC  + P+  ++ +K+AG + FY +
Sbjct: 106 PCKMIDPIVNELAQKYAGQFKFYKL 130


>At5g67220.1 68418.m08473 nitrogen regulation family protein similar
           to unknown protein (gb|AAF51525.1) ; contains Pfam
           domain PF01207: Dihydrouridine synthase (Dus); similar
           to (SP:P45672) NIFR3-like protein (SP:P45672)
           [Azospirillum brasilense]
          Length = 423

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 241 FLTTKRAALSDVRLLNNNPCAKCDFFNILDSV 336
           FL T+++ +S  R +  NP  K D   +LD +
Sbjct: 10  FLRTRKSLISQTRAMTQNPDPKPDPSQVLDDI 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,973,267
Number of Sequences: 28952
Number of extensions: 230929
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)