Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30317
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 180 3e-46
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 180 3e-46
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 180 3e-46
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 49 8e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 36 0.006
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 29 0.53
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 27 2.1
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.8
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.9
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 180 bits (437), Expect = 3e-46
Identities = 88/161 (54%), Positives = 109/161 (67%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEETMGDRGRLARASGNFATVIGHNPD 442
YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EE GDRG L R+SGN+ ++GH+ D
Sbjct: 82 YTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVD 141
Query: 443 AKRTRVKLPSGAKKVLPSSNRGWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGHMYVVL 622
+TRVKLPSGAKKV+PSS RG ++ + K R +
Sbjct: 142 TGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGV 201
Query: 623 PMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRT 745
MNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAARRT
Sbjct: 202 AMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARRT 242
Score = 116 bits (280), Expect = 3e-27
Identities = 53/83 (63%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FR+PY ++T E F+A + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
Score = 81.4 bits (192), Expect = 1e-16
Identities = 34/42 (80%), Positives = 38/42 (90%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAHEP 633
+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVA P
Sbjct: 164 VVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNP 205
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 180 bits (437), Expect = 3e-46
Identities = 88/161 (54%), Positives = 109/161 (67%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEETMGDRGRLARASGNFATVIGHNPD 442
YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EE GDRG L R+SGN+ ++GH+ D
Sbjct: 82 YTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVD 141
Query: 443 AKRTRVKLPSGAKKVLPSSNRGWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGHMYVVL 622
+TRVKLPSGAKKV+PSS RG ++ + K R +
Sbjct: 142 TGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGV 201
Query: 623 PMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRT 745
MNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAARRT
Sbjct: 202 AMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARRT 242
Score = 116 bits (280), Expect = 3e-27
Identities = 53/83 (63%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FR+PY ++T E F+A + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
Score = 81.4 bits (192), Expect = 1e-16
Identities = 34/42 (80%), Positives = 38/42 (90%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAHEP 633
+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVA P
Sbjct: 164 VVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNP 205
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 180 bits (437), Expect = 3e-46
Identities = 88/161 (54%), Positives = 109/161 (67%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEETMGDRGRLARASGNFATVIGHNPD 442
YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EE GDRG L R+SGN+ ++GH+ D
Sbjct: 82 YTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVD 141
Query: 443 AKRTRVKLPSGAKKVLPSSNRGWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGHMYVVL 622
+TRVKLPSGAKKV+PSS RG ++ + K R +
Sbjct: 142 TGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGV 201
Query: 623 PMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRT 745
MNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAARRT
Sbjct: 202 AMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARRT 242
Score = 116 bits (280), Expect = 3e-27
Identities = 53/83 (63%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FR+PY ++T E F+A + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
Score = 81.4 bits (192), Expect = 1e-16
Identities = 34/42 (80%), Positives = 38/42 (90%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAHEP 633
+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVA P
Sbjct: 164 VVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNP 205
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 48.8 bits (111), Expect = 8e-07
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Frame = +2
Query: 302 LEVGNVMPVGAMPEGTIVCNLEETMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGA- 478
L+ GN P+ +P GT++ + + +L R++G+ A +I D K V+L SG
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 479 KKVLPSSNRGWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGHMYVV-LPMNPVEHPHGG 655
+K+L +S + V++N++ + + RS V MNP +HPHGG
Sbjct: 220 RKILDTS-------FATIGVVSNIYWQHRQLGKAGRSRWLGIRPTVRGTAMNPCDHPHGG 272
Query: 656 GNHQHIG 676
G + IG
Sbjct: 273 GGGKSIG 279
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 35.9 bits (79), Expect = 0.006
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = -2
Query: 549 RFVNTSTSSNNTDQ-PLLLDGRTFLAPDGSFTLVRLASGLCPITVAKF 409
RF+N +T+S++T Q PLLLD + S +V +ASG+ P+ KF
Sbjct: 120 RFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKF 167
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 29.5 bits (63), Expect = 0.53
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -2
Query: 561 SFQNRFVNTSTSSNNTDQPLLLDGRTFLAPDGSFTLV----RLASGLCPITVAKFPEARA 394
SF+ + NT+T N + + LDGR +P G V L + L + + P
Sbjct: 37 SFRRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDRLPSTSV 96
Query: 393 RRPLSPIVS 367
R+ PI S
Sbjct: 97 RQHNLPITS 105
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 487 SAIKQQRLVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRG 618
S + +LV ++KPI K+K K +CW +RG
Sbjct: 51 SQLNWSKLVASGQNLSGVEKPIPVTKEELAKHKTKEDCWIAIRG 94
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Frame = -2
Query: 438 GLCPITVAKFPEARARRPLSPIVSSRLH-----TMVPSGIAPTGIT---FPTSRVAFFP 286
G+ P+ + P A P SP VSS H VP+ AP G FP + +P
Sbjct: 298 GMYPLPFSPLPSAAPPIPFSPNVSSHPHMAFLPATVPTHSAPPGFVPYDFPITNDKMYP 356
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +1
Query: 457 SKATVWSQEGSAIKQQRLVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYV 612
+K + S + QR+ + GG++D P + A ++K V+ C ++
Sbjct: 326 AKIIIGSIADVTLPVQRMYYFIKAGGKLDVPTIHAFYQHYKEFVRPKCLEHI 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,193,809
Number of Sequences: 5004
Number of extensions: 70694
Number of successful extensions: 212
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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