Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30317
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      177   6e-45
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    33   0.24 
07_03_1050 - 23570785-23570824,23570938-23571004,23571114-235711...    31   0.97 
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   2.9  
11_06_0754 - 26935647-26937780,26940890-26941827                       29   5.2  
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443...    29   5.2  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    29   5.2  
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269...    28   6.8  
06_02_0282 + 13720419-13720985                                         28   9.0  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  177 bits (432), Expect = 6e-45
 Identities = 87/161 (54%), Positives = 107/161 (66%)
 Frame = +2

Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEETMGDRGRLARASGNFATVIGHNPD 442
           YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +GDRG  ARASG++A VI HNPD
Sbjct: 83  YTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPD 142

Query: 443 AKRTRVKLPSGAKKVLPSSNRGWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGHMYVVL 622
              +R+KLPSGAKK++PSS R     +           K        R           +
Sbjct: 143 NGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGV 202

Query: 623 PMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRT 745
            MNPVEHPHGGGNHQHIG ASTV+R    G+KVGLIAARRT
Sbjct: 203 AMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRT 243



 Score =  126 bits (304), Expect = 2e-29
 Identities = 57/83 (68%), Positives = 69/83 (83%)
 Frame = +1

Query: 19  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
           V FR P+++K +KELF+A + ++
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMY 83



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 31/42 (73%), Positives = 36/42 (85%)
 Frame = +1

Query: 508 LVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAHEP 633
           ++G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVA  P
Sbjct: 165 MIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNP 206


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 525 WRWTY*QTYFESWKGIPQVQG 587
           W WTY  T+F SW  +P +QG
Sbjct: 70  WSWTYWSTFFLSWSIVPTLQG 90


>07_03_1050 -
           23570785-23570824,23570938-23571004,23571114-23571196,
           23572028-23572201,23572268-23572471,23572570-23573300
          Length = 432

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -1

Query: 682 SLTYMLMVTTTVRMLYRVHGQHHV 611
           SLT +LM   T+R++ R HGQ+HV
Sbjct: 228 SLTSLLMGLNTIRVVEREHGQYHV 251


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 403 LWKLRHCDWT 432
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>11_06_0754 - 26935647-26937780,26940890-26941827
          Length = 1023

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 496 KQQRLVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVR 615
           K+ R+V IV  GG I K  L A   Y K + +  CW +VR
Sbjct: 232 KRLRVVSIVGVGG-IGKTTL-ANELYRKLRRQFECWAFVR 269


>02_05_0812 +
           31942591-31942758,31943415-31943491,31944169-31944327,
           31944559-31944772,31944849-31944935,31945022-31945161,
           31945380-31945460,31945948-31946012,31946219-31946394,
           31947212-31947342,31947438-31947525,31947671-31947884,
           31948206-31948312,31948456-31948953
          Length = 734

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 525 WRWTY*QTYFESWKGIPQVQG 587
           W W+Y  T+  +W  +P +QG
Sbjct: 70  WSWSYWSTFILTWAVVPTIQG 90


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 434 CVQSQWRSFQRHVPDDLYHPLFLQDCTQWY 345
           C    W++   H+P  L H L   +C  WY
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102


>05_04_0272 +
           19624898-19625071,19625909-19626370,19626471-19626905,
           19626992-19627237,19627318-19628085,19628245-19628417,
           19629337-19629440,19629525-19630127,19630210-19630214
          Length = 989

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 575 WYALPAFKIGLSIRPPPATIPTSLCCLMAEPS--WLQTVA 462
           W++ P+F +   + P P+T+  S+   +   S  WL TV+
Sbjct: 496 WWSKPSFLMDHQLHPAPSTVTNSVVSRIKNSSSGWLNTVS 535


>06_02_0282 + 13720419-13720985
          Length = 188

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 641 HPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARR 742
           +PHGGG H  +      +R    G +   +AARR
Sbjct: 47  NPHGGGGHAPLPPPQNPRRPNLVGAEEVAVAARR 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,133,867
Number of Sequences: 37544
Number of extensions: 510379
Number of successful extensions: 1475
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)