Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30317
(745 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 196 2e-50
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 137 1e-32
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 38 0.009
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 31 1.3
SB_26475| Best HMM Match : Cadherin (HMM E-Value=0.009) 29 3.0
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 196 bits (478), Expect = 2e-50
Identities = 96/161 (59%), Positives = 113/161 (70%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEETMGDRGRLARASGNFATVIGHNPD 442
YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EE GDRGRLAR SGN+ATVI HN +
Sbjct: 83 YTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVE 142
Query: 443 AKRTRVKLPSGAKKVLPSSNRGWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGHMYVVL 622
KRTRVKLPSG KKV+PSSNR ++ + K ++ +
Sbjct: 143 KKRTRVKLPSGIKKVIPSSNRALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGV 202
Query: 623 PMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRT 745
MNPVEHPHGGGNHQHIG STV+R T AGRKVGLIAARRT
Sbjct: 203 AMNPVEHPHGGGNHQHIGHPSTVRRDTPAGRKVGLIAARRT 243
Score = 141 bits (341), Expect = 6e-34
Identities = 64/83 (77%), Positives = 72/83 (86%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIR QRKGAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FRDPY++K RKELF+A + ++
Sbjct: 61 VVFRDPYRYKLRKELFVATEGMY 83
Score = 85.0 bits (201), Expect = 6e-17
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAHEP 633
LVGIVAGGGRIDKP+LKAGRAYHKYK KRNCWP VRGVA P
Sbjct: 165 LVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNP 206
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 137 bits (331), Expect = 1e-32
Identities = 60/81 (74%), Positives = 70/81 (86%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEETMGDRGRLARASGNFATVIGHNPD 442
YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EE GDRGRLAR SGN+ATVI HN +
Sbjct: 41 YTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVE 100
Query: 443 AKRTRVKLPSGAKKVLPSSNR 505
KRTRVKLPSG KKV+PSSNR
Sbjct: 101 KKRTRVKLPSGIKKVIPSSNR 121
Score = 71.3 bits (167), Expect = 8e-13
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +1
Query: 145 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPKALH 267
GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A + ++
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMY 41
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 37.9 bits (84), Expect = 0.009
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +2
Query: 296 ATLEVGNVMPVGAMPEGTIVCNLEETMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSG 475
A L+ G+ P+ +P GT+V N+E G +LARA+G A +I + V+LPS
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167
Query: 476 AKKVLPS 496
+K + S
Sbjct: 168 VEKEVSS 174
>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 31.1 bits (67), Expect = 0.99
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -1
Query: 451 TLSIRIVSNHSGEVSRGTCQTTSITHCFFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 278
T SI ++ + + + GTC+ + FFK+ H + H + H ++N C + ++
Sbjct: 76 THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135
Query: 277 KLACV 263
CV
Sbjct: 136 NQRCV 140
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 591 FDLVLVVCPSSFQNRFVNT--STSSNNTDQPLLLDGRTFLAPDGSFT 457
F L V PSS QN F + + ++ T L+LD TFL PDGS T
Sbjct: 114 FSLNCDVIPSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159
>SB_26475| Best HMM Match : Cadherin (HMM E-Value=0.009)
Length = 340
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 488 LPSSNRGWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGHMYVVLPMNPVEHPHGGGNHQ 667
L N+G+ LL +D T + + T TRS +TA + P H HQ
Sbjct: 186 LSKFNKGYKFLLTCIDKFTKVAWAVP-LKTKTRSEITAAFKMIFKSQKPRIHQTDKNTHQ 244
Query: 668 HIG 676
++G
Sbjct: 245 YLG 247
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 311 GNVMPVGAMPEGTIVCNLEETMGDRGRLAR-ASGNFATVIG 430
G+ PV +P G +C + +G R AR G F ++ G
Sbjct: 737 GHSKPVDGLPRGDAICGCPKAIGRRHARARLLEGRFLSISG 777
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,963,180
Number of Sequences: 59808
Number of extensions: 570396
Number of successful extensions: 1417
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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