Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30317
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    25   0.75 
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   4.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.0  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 425 IGHNPDAKRTRVKLPSGAKKVLPSSNRGWSVLLLE 529
           IG+  + K+TR  LP+G +KVL  + +   VL+++
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVLVHNVKELEVLMMQ 90


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 183 CTFGCCTLPRSIQVQDKEGALHCSEGSTQANLFI 284
           C FG   +  S  V +   + H  +GS +A  F+
Sbjct: 174 CIFGNRLIEESSSVMEAAYSCHWYDGSEEAKTFV 207


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 550  ILKAGRAYHKYKVKRNCWPYVRGVAHEPCRASSRWW 657
            I++A  AY + ++ R   PY+R  A        R+W
Sbjct: 1162 IVQAENAYPEVELDRELRPYLRTAAAILTWNEKRFW 1197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,664
Number of Sequences: 438
Number of extensions: 4991
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)