Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30317
(745 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 183 1e-46
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 180 9e-46
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 175 3e-44
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 51 7e-07
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 51 7e-07
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 29 2.5
At2g44150.1 68415.m05492 SET domain-containing protein (ASHH3) l... 29 3.3
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ... 28 5.7
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 28 7.5
At5g58575.1 68418.m07339 expressed protein 27 9.9
At4g33410.1 68417.m04748 signal peptide peptidase family protein... 27 9.9
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 9.9
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 27 9.9
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 183 bits (446), Expect = 1e-46
Identities = 89/161 (55%), Positives = 112/161 (69%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEETMGDRGRLARASGNFATVIGHNPD 442
YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E +GDRG LARASG++A VI HNP+
Sbjct: 84 YTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPE 143
Query: 443 AKRTRVKLPSGAKKVLPSSNRGWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGHMYVVL 622
+ TRVKLPSG+KK+LPS+ R + F K ++ + +
Sbjct: 144 SNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGV 203
Query: 623 PMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRT 745
MNPVEHPHGGGNHQHIG ASTV+R SAG KVG IAARRT
Sbjct: 204 AMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKVGQIAARRT 244
Score = 119 bits (287), Expect = 2e-27
Identities = 56/84 (66%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
Frame = +1
Query: 19 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 195
MGRVIRAQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60
Query: 196 VVHFRDPYKFKTRKELFIAPKALH 267
V FR P+++ +KELF+A + ++
Sbjct: 61 RVAFRHPFRYMKQKELFVAAEGMY 84
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 180 bits (438), Expect = 9e-46
Identities = 89/161 (55%), Positives = 109/161 (67%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEETMGDRGRLARASGNFATVIGHNPD 442
YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +GDRG LARASG++A VI HNPD
Sbjct: 83 YTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPD 142
Query: 443 AKRTRVKLPSGAKKVLPSSNRGWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGHMYVVL 622
+ TR+KLPSG+KK++PS R + K R + +
Sbjct: 143 SDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGV 202
Query: 623 PMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRT 745
MNPVEHPHGGGNHQHIG ASTV+R G+KVGLIAARRT
Sbjct: 203 AMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRT 243
Score = 127 bits (306), Expect = 9e-30
Identities = 58/83 (69%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FR P++FK +KELF+A + ++
Sbjct: 61 VTFRHPFRFKKQKELFVAAEGMY 83
Score = 71.7 bits (168), Expect = 5e-13
Identities = 30/42 (71%), Positives = 35/42 (83%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAHEP 633
++G VAGGGR +KP+LKAG AYHKY+VKRN WP VRGVA P
Sbjct: 165 MIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNP 206
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 175 bits (426), Expect = 3e-44
Identities = 86/161 (53%), Positives = 106/161 (65%)
Frame = +2
Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEETMGDRGRLARASGNFATVIGHNPD 442
YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +GDRG ARASG++A VI HNPD
Sbjct: 83 YTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPD 142
Query: 443 AKRTRVKLPSGAKKVLPSSNRGWSVLLLEVDVLTNLF*KLEGHTTSTRSNVTAGHMYVVL 622
+R+KLPSG+KK++PS R + K R +
Sbjct: 143 NDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGV 202
Query: 623 PMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRT 745
MNPVEHPHGGGNHQHIG ASTV+R G+KVGLIAARRT
Sbjct: 203 AMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLIAARRT 243
Score = 127 bits (306), Expect = 9e-30
Identities = 58/83 (69%), Positives = 69/83 (83%)
Frame = +1
Query: 19 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 199 VHFRDPYKFKTRKELFIAPKALH 267
V FR P++FK +KELF+A + ++
Sbjct: 61 VAFRHPFRFKKQKELFVAAEGMY 83
Score = 75.8 bits (178), Expect = 3e-14
Identities = 31/42 (73%), Positives = 36/42 (85%)
Frame = +1
Query: 508 LVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAHEP 633
++G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVA P
Sbjct: 165 MIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNP 206
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 51.2 bits (117), Expect = 7e-07
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Frame = +2
Query: 308 VGNVMPVGAMPEGTIVCNLEETMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 487
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 488 LPSSNRGWSVLLLEVDVLT-NLF*KLEGHTTSTRSNVTAGHMYVVLPMNPVEHPHGGG 658
+ + R + T L+ + R V + MNP +HPHGGG
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQSRWLGIRPKVRG------VAMNPCDHPHGGG 169
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 51.2 bits (117), Expect = 7e-07
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Frame = +2
Query: 308 VGNVMPVGAMPEGTIVCNLEETMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 487
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 488 LPSSNRGWSVLLLEVDVLT-NLF*KLEGHTTSTRSNVTAGHMYVVLPMNPVEHPHGGG 658
+ + R + T L+ + R V + MNP +HPHGGG
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQSRWLGIRPKVRG------VAMNPCDHPHGGG 169
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2
Query: 617 VLPMNPVEHPHGG 655
V MNPVEHPHGG
Sbjct: 425 VAMMNPVEHPHGG 437
>At2g44150.1 68415.m05492 SET domain-containing protein (ASHH3) low
similarity to huntingtin interacting protein 1 [Homo
sapiens] GI:12697196; contains Pfam profile PF00856: SET
domain; identical to cDNA ASH1-like protein 3 (ASHH3)
partial cds GI:15488419
Length = 363
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -2
Query: 624 GNTTYIWPAVTFDLVLVVCPSSFQNRFVNTSTSSNNTDQPLLLDGRT 484
G T + +T D+V+ ++R++N S + N Q ++DG T
Sbjct: 166 GETNFYLCEITRDMVIDATHKGNKSRYINHSCNPNTQMQKWIIDGET 212
>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 733
Score = 28.3 bits (60), Expect = 5.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 525 WRWTY*QTYFESWKGIPQVQG 587
W W+Y T+ +W +P +QG
Sbjct: 74 WSWSYWSTFLLTWAVVPLIQG 94
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 586 VKRNCWPYVRGVAHEPCRASSRW 654
+KRNC+ ++R +HE R + W
Sbjct: 673 IKRNCFRFIRECSHEGLRRNKVW 695
>At5g58575.1 68418.m07339 expressed protein
Length = 181
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 305 EVGNVMPVGA-MPEGTIVCNLEETMGDRGRLARASGNFATVIGHNPDAKRT 454
EV N M G + G +LE+ MG +GR ARA +T N +A+R+
Sbjct: 91 EVFNCMNCGRQIVAGRFAPHLEKCMG-KGRKARAKTTRSTTAAQNRNARRS 140
>At4g33410.1 68417.m04748 signal peptide peptidase family protein
contains Pfam domain PF04258: Membrane protein of
unknown function (DUF435)
Length = 372
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 581 YLWYALPAFKIGL 543
Y+WYALP + IGL
Sbjct: 301 YIWYALPGYAIGL 313
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 418 GEVSRGTCQTTSITHCFFKIAHNGTLRHSSNRHHISNF 305
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 27.5 bits (58), Expect = 9.9
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -3
Query: 395 PDDLYHPLFLQDCTQWYPQA*-LQQASHFQLQELLSFHNKQIGLCRAFGAMKSSFLVLNL 219
P YH L + + P +QQ S +L + ++ + R FG+ ++S+ L L
Sbjct: 210 PQPFYHHLSSYNPHHYSPPTFSMQQGSRNRLSASTTSYSLPLKKLRVFGSYQASYHHLLL 269
Query: 218 YGSRKCTTAKGAPLPGSWIIS 156
SR KG SW+IS
Sbjct: 270 LRSRAILWFKGC----SWLIS 286
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,159,833
Number of Sequences: 28952
Number of extensions: 384784
Number of successful extensions: 1129
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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