Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30316X
         (339 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   0.65 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   4.6  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    20   8.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 276 TGIDAFQGFCEQTWPI 323
           T +D F+G C   WP+
Sbjct: 515 TDLDDFKGVCGMKWPL 530


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 264 GDQVTGIDAFQGFCEQTW 317
           G  V  I+AFQ  C++ W
Sbjct: 81  GTCVDKINAFQCICKEGW 98


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = +3

Query: 315 WPIWVY 332
           WP WVY
Sbjct: 190 WPAWVY 195


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,064
Number of Sequences: 336
Number of extensions: 485
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)