Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30316X
(339 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 37 7e-04
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 37 7e-04
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 36 0.002
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 27 0.78
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 27 0.78
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 27 0.78
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 27 0.78
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 25 4.2
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 24 5.5
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg... 24 7.3
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein... 23 9.6
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 23 9.6
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 37.1 bits (82), Expect = 7e-04
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = -2
Query: 338 IDVDPYWPGLFAKPLEGINARDLITNIG 255
+DV+P W +FAK LEG + ++L+ NIG
Sbjct: 36 VDVEPIWATIFAKALEGKDLKELLLNIG 63
Score = 27.1 bits (57), Expect = 0.78
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -1
Query: 144 SDDDMGFGLFD 112
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 37.1 bits (82), Expect = 7e-04
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = -2
Query: 338 IDVDPYWPGLFAKPLEGINARDLITNIG 255
+DV+P W +FAK LEG + ++L+ NIG
Sbjct: 36 VDVEPIWATIFAKALEGKDLKELLLNIG 63
Score = 27.1 bits (57), Expect = 0.78
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -1
Query: 144 SDDDMGFGLFD 112
SD+DMGFGLFD
Sbjct: 99 SDEDMGFGLFD 109
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 35.5 bits (78), Expect = 0.002
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = -2
Query: 338 IDVDPYWPGLFAKPLEGINARDLITNIG 255
++V+P W +FAK LEG + ++L+ NIG
Sbjct: 36 VEVEPIWATIFAKALEGKDLKELLLNIG 63
Score = 27.1 bits (57), Expect = 0.78
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -1
Query: 144 SDDDMGFGLFD 112
SD+DMGFGLFD
Sbjct: 99 SDEDMGFGLFD 109
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 0.78
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -1
Query: 144 SDDDMGFGLFD 112
SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 0.78
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -1
Query: 144 SDDDMGFGLFD 112
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 0.78
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -1
Query: 144 SDDDMGFGLFD 112
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 0.78
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -1
Query: 144 SDDDMGFGLFD 112
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 498
Score = 24.6 bits (51), Expect = 4.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 246 PLQADVGDQVTGIDAFQGFC 305
P QA GD V DA+ G C
Sbjct: 16 PNQASNGDAVPNTDAYMGLC 35
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 24.2 bits (50), Expect = 5.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 289 PSKGFANRPGQYGS 330
PSKGF NRP ++ S
Sbjct: 314 PSKGFHNRPKKFAS 327
>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
diacylglycerol ethanolaminesphotranferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 386
Score = 23.8 bits (49), Expect = 7.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 326 PYWPGLFAKPLEGINARDLITNIGLEWVLLRPL 228
PYW K + A +LIT IGL +V++ L
Sbjct: 31 PYWWNQLLKVIPMSMAPNLITLIGLGFVVINIL 63
>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 272 GHGH*CLPRVLRTDLANM 325
G+G C P V RTD AN+
Sbjct: 186 GNGMNCWPAVHRTDAANL 203
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 23.4 bits (48), Expect = 9.6
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 287 INARDLITNIGLEWVL 240
+N RD++TN EW++
Sbjct: 208 LNERDILTNTNSEWLV 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 859,592
Number of Sequences: 5004
Number of extensions: 8439
Number of successful extensions: 33
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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