BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30316X (339 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 37 0.005 05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 26 6.6 02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 26 6.6 01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 26 6.6 >08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-899049 Length = 110 Score = 36.7 bits (81), Expect = 0.005 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = -2 Query: 338 IDVDPYWPGLFAKPLEGINARDLITNIG 255 I V+ YWPGLFAK LE + DLI ++G Sbjct: 36 IKVEAYWPGLFAKLLEHRSVDDLILSVG 63 Score = 26.2 bits (55), Expect = 6.6 Identities = 10/11 (90%), Positives = 10/11 (90%) Frame = -1 Query: 144 SDDDMGFGLFD 112 SDDDMGF LFD Sbjct: 100 SDDDMGFSLFD 110 >05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 Length = 113 Score = 26.2 bits (55), Expect = 6.6 Identities = 10/11 (90%), Positives = 10/11 (90%) Frame = -1 Query: 144 SDDDMGFGLFD 112 SDDDMGF LFD Sbjct: 103 SDDDMGFSLFD 113 >02_04_0074 - 19474786-19474812,19475174-19475400,19476362-19476496, 19478662-19479193 Length = 306 Score = 26.2 bits (55), Expect = 6.6 Identities = 10/11 (90%), Positives = 10/11 (90%) Frame = -1 Query: 144 SDDDMGFGLFD 112 SDDDMGF LFD Sbjct: 296 SDDDMGFSLFD 306 >01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 Length = 114 Score = 26.2 bits (55), Expect = 6.6 Identities = 10/11 (90%), Positives = 10/11 (90%) Frame = -1 Query: 144 SDDDMGFGLFD 112 SDDDMGF LFD Sbjct: 104 SDDDMGFSLFD 114 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,541,128 Number of Sequences: 37544 Number of extensions: 54898 Number of successful extensions: 139 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 138 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 139 length of database: 14,793,348 effective HSP length: 73 effective length of database: 12,052,636 effective search space used: 470052804 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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