Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30316X
         (339 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   1e-04
SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)                 29   0.73 
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.3  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = -2

Query: 338 IDVDPYWPGLFAKPLEGINARDLITNIG 255
           I+V+P+WPGLFAK L+G N  DLI + G
Sbjct: 37  INVEPFWPGLFAKALQGHNIADLILSAG 64



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = -1

Query: 144 SDDDMGFGLFD 112
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)
          Length = 936

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 255 ADVGDQVTGIDAFQGFCEQTWP 320
           A VG  V G DA  GFC++ WP
Sbjct: 106 ARVGFAVWGYDADSGFCKEDWP 127


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = -1

Query: 144 SDDDMGFGLFD 112
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,418,824
Number of Sequences: 59808
Number of extensions: 61205
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)