Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30316X
         (339 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosom...    56   1e-08
AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p pro...    56   1e-08
AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA ...    56   1e-08
Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein ( Dros...    54   6e-08
M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair pro...    27   6.2  
BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p pro...    27   6.2  
AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p pro...    27   6.2  
AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA...    27   6.2  

>S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosomal
           protein rpA2 protein.
          Length = 112

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 22/28 (78%), Positives = 26/28 (92%)
 Frame = -2

Query: 338 IDVDPYWPGLFAKPLEGINARDLITNIG 255
           ++V+PYWPGLFAK LEGIN +DLITNIG
Sbjct: 37  VEVEPYWPGLFAKALEGINVKDLITNIG 64



 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = -1

Query: 144 SDDDMGFGLFD 112
           SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112


>AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p
           protein.
          Length = 112

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 22/28 (78%), Positives = 26/28 (92%)
 Frame = -2

Query: 338 IDVDPYWPGLFAKPLEGINARDLITNIG 255
           ++V+PYWPGLFAK LEGIN +DLITNIG
Sbjct: 37  VEVEPYWPGLFAKALEGINVKDLITNIG 64



 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = -1

Query: 144 SDDDMGFGLFD 112
           SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112


>AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA
           protein.
          Length = 112

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 22/28 (78%), Positives = 26/28 (92%)
 Frame = -2

Query: 338 IDVDPYWPGLFAKPLEGINARDLITNIG 255
           ++V+PYWPGLFAK LEGIN +DLITNIG
Sbjct: 37  VEVEPYWPGLFAKALEGINVKDLITNIG 64



 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = -1

Query: 144 SDDDMGFGLFD 112
           SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112


>Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for A-type ribosomal protein
           rp21C. ).
          Length = 112

 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 21/28 (75%), Positives = 25/28 (89%)
 Frame = -2

Query: 338 IDVDPYWPGLFAKPLEGINARDLITNIG 255
           ++V+PYWPGLFAK LE IN +DLITNIG
Sbjct: 37  VEVEPYWPGLFAKALEAINVKDLITNIG 64



 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = -1

Query: 144 SDDDMGFGLFD 112
           SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112


>M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair
           protein protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -1

Query: 141 DDDMGFGLFD 112
           DDDMGFGLFD
Sbjct: 308 DDDMGFGLFD 317


>BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p
           protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -1

Query: 141 DDDMGFGLFD 112
           DDDMGFGLFD
Sbjct: 308 DDDMGFGLFD 317


>AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p
           protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -1

Query: 141 DDDMGFGLFD 112
           DDDMGFGLFD
Sbjct: 308 DDDMGFGLFD 317


>AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA
           protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -1

Query: 141 DDDMGFGLFD 112
           DDDMGFGLFD
Sbjct: 308 DDDMGFGLFD 317


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,192,041
Number of Sequences: 53049
Number of extensions: 93629
Number of successful extensions: 232
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 777358641
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)