Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30316X
(339 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative 36 0.005
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 36 0.005
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 36 0.005
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 36 0.009
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 36 0.009
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 35 0.012
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)... 29 0.60
At5g50100.1 68418.m06204 expressed protein contains Pfam domain ... 27 4.2
At1g79320.1 68414.m09244 latex abundant protein, putative (AMC5)... 26 5.6
At1g11000.1 68414.m01263 seven transmembrane MLO family protein ... 26 7.4
>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
Length = 111
Score = 36.3 bits (80), Expect = 0.005
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2
Query: 338 IDVDPYWPGLFAKPLEGINARDLITNIG 255
++V+ YWP LFAK E N DLI N+G
Sbjct: 36 VNVESYWPSLFAKLCEKKNIDDLIMNVG 63
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 338 IDVDPYWPGLFAKPLEGINARDLITNIG 255
++++ YWP LFAK E N DLI N+G
Sbjct: 37 VEIESYWPMLFAKMAEKRNVTDLIMNVG 64
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 338 IDVDPYWPGLFAKPLEGINARDLITNIG 255
++++ YWP LFAK E N DLI N+G
Sbjct: 37 VEIESYWPMLFAKMAEKRNVTDLIMNVG 64
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 35.5 bits (78), Expect = 0.009
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 338 IDVDPYWPGLFAKPLEGINARDLITNIG 255
+ ++ YWP LFAK E N DLI N+G
Sbjct: 37 VSIESYWPMLFAKMAEKRNVTDLIMNVG 64
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 35.5 bits (78), Expect = 0.009
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 338 IDVDPYWPGLFAKPLEGINARDLITNIG 255
+ ++ YWP LFAK E N DLI N+G
Sbjct: 37 VSIESYWPMLFAKMAEKRNVTDLIMNVG 64
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 35.1 bits (77), Expect = 0.012
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 338 IDVDPYWPGLFAKPLEGINARDLITNIG 255
+ ++ YWP LFAK E N DLI N+G
Sbjct: 37 VTIESYWPMLFAKMAEKRNVTDLIMNVG 64
>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 410
Score = 29.5 bits (63), Expect = 0.60
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 262 LVIRSRALMPSKGFANRPGQYGSTS 336
LV+++R L+ +GF+ RPG Y S S
Sbjct: 378 LVLKARKLLKKQGFSQRPGLYCSDS 402
>At5g50100.1 68418.m06204 expressed protein contains Pfam domain
PF04134: Protein of unknown function, DUF393
Length = 214
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 243 HPLQADVGDQVTGIDAFQGFCEQTWPIWVY 332
H +Q+D G+ V G++AF+ E+ WVY
Sbjct: 131 HAIQSD-GNVVKGVEAFRRLYEEVGLGWVY 159
>At1g79320.1 68414.m09244 latex abundant protein, putative (AMC5) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 368
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 262 LVIRSRALMPSKGFANRPGQY 324
LV+++R L+ +GF RPG Y
Sbjct: 336 LVLKARKLLRKQGFDQRPGLY 356
>At1g11000.1 68414.m01263 seven transmembrane MLO family protein /
MLO-like protein 4 (MLO4) identical to membrane protein
Mlo4 [Arabidopsis thaliana] gi|14091578|gb|AAK53797;
similar to MLO protein SWISS-PROT:P93766,
NCBI_gi:1877221 [Hordeum vulgare][Barley]
Length = 573
Score = 25.8 bits (54), Expect = 7.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 285 DAFQGFCEQTWPIWVY 332
D F G +WP+WVY
Sbjct: 270 DEFHGIVGISWPLWVY 285
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,511,534
Number of Sequences: 28952
Number of extensions: 44866
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -