Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30315
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 28 1.5
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 27 2.5
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 27 2.5
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 27 3.4
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 26 4.4
SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyce... 26 4.4
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos... 26 4.4
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 26 5.9
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 26 5.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 7.8
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 390 LQDTEKMEIVICLMNQTSPDKSLDTCLTQVDKMSESDKLKDAHPVNKETICSRRT 554
+ D E E + L + D+S++T ++ ++ SES+ +D NK I R+T
Sbjct: 214 VSDDEDEEEISDLEDWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKT 268
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 386 QPPGHGEDGDCNMPHEPDQPRQVFGHVLNSSGQDV 490
+PP EDG M +P + ++ V++S+ DV
Sbjct: 235 EPPEDSEDGISEMNEDPSESGEMIEQVISSTMNDV 269
>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 425
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -2
Query: 559 ITVRREQIVSLFTGCASFSLSDSDILST*VKHVSKDLSGLVW 434
+ V+ +Q V L GC + + S +++ V HV+KD GLVW
Sbjct: 285 VEVKNKQEV-LHMGC--YGIGVSRLIAA-VAHVTKDAKGLVW 322
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 432 NQTSPDKSLDTCLTQVDKMSESDKLKDAHPVNKETICS 545
N T ++S D ++DK++ESD LK N + CS
Sbjct: 81 NGTENERS-DELYVEIDKVAESDFLKHLKKYNLRSRCS 117
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 533 DNLLASYGDKTDAVMRPLAFVPTVIINEKYDKDV 634
DNLL S+ + A + LA+ I EK++K++
Sbjct: 193 DNLLISFDHRNKAELVQLAYDDPYRITEKFEKNI 226
>SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 139
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 75 VLYQEKKRLYDFFETPAHNNVTTS 4
VLY E K +D+ P+ +++TTS
Sbjct: 13 VLYPEAKEFFDYPTIPSDSSITTS 36
>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 486 SCPLELSTCPKTCRGWS 436
+CPLEL+TC T + W+
Sbjct: 169 TCPLELTTCAITFKFWT 185
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 576 ITASVLSPYDASRLSPCSLDAHLSVYPTPTSCPLELST 463
+TA S Y+A + P SL H S+ T + L LST
Sbjct: 183 LTAFYWSVYEAQQKRPFSLRWHTSLLSTGVALGLALST 220
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = -2
Query: 508 FSLSDSDILST*VKHVSKDLSGLVWFMRHITISIFSVS 395
+ + +SDI S KH+ D+S + W + + +++
Sbjct: 434 YPVDESDITSLFQKHIMSDISAIPWIDEPVEVETKTIA 471
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 249 RTVKVKMVPYGKSTHDKVDGKWSFICHHGADE 344
+T K K P+ + T+ KVD WS H + E
Sbjct: 2342 QTTKHKRSPFCQVTYSKVDIPWSMELHAASVE 2373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,269
Number of Sequences: 5004
Number of extensions: 62714
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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