Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30315
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278... 43 3e-04
03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267... 42 3e-04
03_02_0673 - 10328994-10329281 36 0.030
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 33 0.21
05_01_0258 + 1984666-1984878,1985019-1985852 31 0.65
11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601... 30 2.0
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 30 2.0
12_01_1061 + 10964571-10964927,10965393-10965425,10965865-109659... 29 2.6
08_02_0360 + 16196712-16197560,16198126-16198875 29 2.6
05_04_0288 + 19839597-19839821,19841882-19842107,19842494-198425... 29 2.6
10_08_0372 + 17280560-17280811,17280901-17281065,17281305-172814... 29 3.5
06_03_0188 - 17691582-17692241 29 3.5
03_02_0203 + 6370729-6370850,6371213-6371391,6371516-6371625,637... 29 4.6
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 29 4.6
04_03_0962 + 21280172-21280255,21281363-21281902,21282052-21282147 28 8.0
>01_06_1209 +
35427160-35427318,35427436-35427501,35427737-35427877,
35428342-35428434,35428530-35428646,35428890-35429054
Length = 246
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 207 VYNDATGSRLEGLQRTVKVKMVPYGKSTHDKVDGKWSFICHHGADECYGNKVQACVLK 380
V ND +GL V +++VP+G +V S C HG +EC N ++ACV++
Sbjct: 16 VVNDLARIFRDGLSPVVDLRLVPFGNG---RVSPDGSITCQHGEEECQLNAIEACVIR 70
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 166 IAVYYESLCPDSKKFITTQLAPVWRDFRGLS 258
++VYYE+LCP F+ LA ++RD GLS
Sbjct: 1 MSVYYETLCPFCSGFVVNDLARIFRD--GLS 29
>03_02_0672 -
10325935-10326150,10326308-10326400,10326568-10326708,
10326828-10326893,10327099-10327359
Length = 258
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/51 (47%), Positives = 29/51 (56%)
Frame = +1
Query: 91 LRLVCFLMLLCYVVAKKKTEDHKVKIAVYYESLCPDSKKFITTQLAPVWRD 243
L L L+L V KK KV +A+YYESLCP S F+ LA V+RD
Sbjct: 11 LLLAAILLLAAGAVEGKK--GGKVDVALYYESLCPYSAMFVVGSLAKVFRD 59
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 237 EGLQRTVKVKMVPYGKSTHDKVDGKWSFICHHGADECYGNKVQACVL 377
+GL V + +VPYG + DGK S HG++EC+ N V+AC +
Sbjct: 59 DGLLDAVDLSLVPYGNARVK--DGKISCQVEHGSEECFLNTVEACAI 103
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 512 CASSEQGDNLLASYGDKTDAVMRPLAFVPTVIINEKYDKDVETQAFENLKAVVCR 676
C E+G L YG +TDA+ P +VP V++ D + +EN +A +C+
Sbjct: 148 CYKGERGHQLSLKYGRQTDALQPPHKYVPWVVV----DGQPLYEDYENFEAYICK 198
>03_02_0673 - 10328994-10329281
Length = 95
Score = 35.9 bits (79), Expect = 0.030
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 157 KVKIAVYYESLCPDSKKFITTQLAPVWRD 243
KV +A+YYE+LCP +FI LA ++ D
Sbjct: 38 KVPLALYYETLCPYCSRFIVNHLAGIFED 66
>04_03_0018 -
9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/76 (27%), Positives = 39/76 (51%)
Frame = +3
Query: 345 CYGNKVQACVLKDRNLQDTEKMEIVICLMNQTSPDKSLDTCLTQVDKMSESDKLKDAHPV 524
CYG KV C++ ++N + E ++ ++ D ++ L + +SE++ LKD +
Sbjct: 471 CYGGKVDGCIV-EKNNSNKE-------ILTDSNEDSGIENVLVKEVIISETNSLKDIQMI 522
Query: 525 NKETICSRRTVIKRML 572
KE I S T K ++
Sbjct: 523 -KEVIISEVTTSKPVI 537
>05_01_0258 + 1984666-1984878,1985019-1985852
Length = 348
Score = 31.5 bits (68), Expect = 0.65
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 91 LRLVCFLMLLCYVVAKKKT-EDHKVKIAVYYESLCPDSKKFITTQLAPVWRDFRG 252
++LVCF++++ A D ++K+ YYE C D +K + + + +D RG
Sbjct: 2 VKLVCFVVVVFMAAAAAMAGADRELKVG-YYEKTCKDVEKIVNSIVVNSIKDNRG 55
>11_01_0727 -
6010537-6010548,6011029-6011606,6011709-6011774,
6011867-6011964,6013238-6013608
Length = 374
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Frame = +2
Query: 239 GTSEDCQSQNGPVWEEHARQGGWEMVIHXXXXXXXXXXXXGASLRPEGPQPPG-HGE--- 406
GTS QSQ ++ HA G + G RP GP PG +G+
Sbjct: 251 GTSGGYQSQTTQ-YQGHANPAGQGQGYYNSQERRNFNQGQGGDFRPGGPSAPGTYGQPPA 309
Query: 407 DGDCNMPHEPDQP 445
G+ PH P P
Sbjct: 310 PGNYAQPHPPTYP 322
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/94 (24%), Positives = 38/94 (40%)
Frame = +3
Query: 225 GSRLEGLQRTVKVKMVPYGKSTHDKVDGKWSFICHHGADECYGNKVQACVLKDRNLQDTE 404
G + L+ V++ PYG + + C H A G ++ A VL+ D+
Sbjct: 608 GDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQY-DSS 666
Query: 405 KMEIVICLMNQTSPDKSLDTCLTQVDKMSESDKL 506
+ CL+N S +DT D MS+ +
Sbjct: 667 AYFVANCLINMYSKCGDVDTARHVFDSMSQKSAI 700
>12_01_1061 +
10964571-10964927,10965393-10965425,10965865-10965909,
10966209-10966220
Length = 148
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 381 DRNLQDTEKMEIVICLMNQTSPDKSLDTCLTQV 479
D NL TEK IC+ Q S +K + + +T V
Sbjct: 107 DTNLDSTEKSPATICISKQRSIEKMVTSTITSV 139
>08_02_0360 + 16196712-16197560,16198126-16198875
Length = 532
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -2
Query: 256 TVL*SPSRREPVASL*TSCCQDKGIRNRPLF*PYGLRFSSSPRH 125
TVL SP EP+ L S + G+R P P + S SPRH
Sbjct: 287 TVLGSPENLEPIGELPGSAKPEPGVRPNPSR-PRSVARSLSPRH 329
>05_04_0288 +
19839597-19839821,19841882-19842107,19842494-19842582,
19845184-19845387,19845463-19845717,19845796-19846011,
19846611-19846766,19846880-19847039,19847702-19847788,
19847789-19847940,19848006-19848143,19848714-19848788,
19849166-19849444
Length = 753
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 154 GLRFSSSPRHSRAASESKPAGESSSCCFISGKKT 53
G F + P +R S KP G+SS+ ISG T
Sbjct: 675 GATFGTKPSPARPPSARKPLGQSSNANIISGTPT 708
>10_08_0372 +
17280560-17280811,17280901-17281065,17281305-17281410,
17281432-17281487,17281607-17282201,17282863-17282975,
17283106-17283326,17284113-17284437
Length = 610
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Frame = +3
Query: 270 VPYGKSTHDKVDGKWSFIC------HHGADECYGNKVQACVLKDRNLQDTEKMEIVI 422
+P+ H+K D W HHGAD+ N KD N+ + + V+
Sbjct: 156 IPHTHLAHEKSDQNWMIDAGGGTHFHHGADKYIANIANMLKFKDNNINNEGMLRTVL 212
>06_03_0188 - 17691582-17692241
Length = 219
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 583 SRVRAHRYY*REIRQRCRNSSLRELEGG 666
S + RY E R R RN LRE+EGG
Sbjct: 186 SLLSLRRYEREETRSRRRNQGLREIEGG 213
>03_02_0203 +
6370729-6370850,6371213-6371391,6371516-6371625,
6372721-6373575
Length = 421
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 181 RNRPLF*PYGLRFSSSPRHSRAASESKPAGESSSCCFIS 65
R+ PL+ P R S+S RHS A + PA S +IS
Sbjct: 29 RSAPLYRPLDSRSSTSRRHSDANRGNSPAAPHSLDIYIS 67
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 371 RPEGPQPPGHGEDGDCNMPHEPDQP 445
RP P PP ED + PH PD P
Sbjct: 118 RPPPPPPPHPPEDPPPHPPHPPDHP 142
>04_03_0962 + 21280172-21280255,21281363-21281902,21282052-21282147
Length = 239
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 401 GEDG--DCNMPHEPDQPRQVFGHVLNSSGQDVGVG*TERCASSEQGDNLLA 547
G+DG ++PH+ Q V G V + V T ++SEQGDNL++
Sbjct: 155 GDDGFITLSLPHQGGQKNLVAGAVSVLERHHIDVV-TATVSASEQGDNLIS 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,820,576
Number of Sequences: 37544
Number of extensions: 465004
Number of successful extensions: 1427
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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