Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30315
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10) 41 0.001
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22) 31 1.2
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11) 31 1.2
SB_26480| Best HMM Match : EGF (HMM E-Value=0) 29 2.7
SB_25297| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_21866| Best HMM Match : UCH (HMM E-Value=0) 29 4.7
SB_13201| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_56578| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 28 6.2
SB_1245| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
>SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 44.4 bits (100), Expect = 9e-05
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 261 VKMVPYGKSTHDKVDGKWSFICHHGADECYGNKVQACVL 377
+ +VPYG + + KW F C HG EC GN ++ C +
Sbjct: 61 ITLVPYGNAQEYRYGNKWVFNCQHGQGECEGNIIEVCAI 99
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/56 (35%), Positives = 35/56 (62%)
Frame = +2
Query: 506 ERCASSEQGDNLLASYGDKTDAVMRPLAFVPTVIINEKYDKDVETQAFENLKAVVC 673
E+CAS QG+ L G +TDA++ +VP V +N ++ ++++ QA N+ +VC
Sbjct: 143 EKCASGLQGNELEHEMGVETDALVPRHNYVPWVTLNGEHTEEIQNQATFNMLGLVC 198
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 160 VKIAVYYESLCPDSKKFITTQLAPVWRDFRGLSKSKWSRMGRARTTRWMGN 312
V I++YYES+C + I QL P ++ + G A+ R+ GN
Sbjct: 27 VAISLYYESMCGGCRDMIRDQLYPTFQKVGSIMDITLVPYGNAQEYRY-GN 76
>SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)
Length = 311
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = +3
Query: 261 VKMVPYGKSTHDKVDGKWSFICHHGADECYGNKVQACVLKDRNLQDTEKMEIVICLMNQT 440
+ MVP+G K + + C +GA+EC N +QAC + N + +
Sbjct: 62 ISMVPFGDGKEIKAKSGFQYYCTNGAEECLENLIQACAVATENNPEILTSFVGCLSYYDG 121
Query: 441 SPDKSLDTCLTQV 479
S DK C Q+
Sbjct: 122 SVDKIAKYCSNQI 134
Score = 35.5 bits (78), Expect = 0.041
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 506 ERCASSEQGDNLLASYGDKTDAVMRPLAFVPTVIINEKYDKDVETQAFENLKAVVCRV 679
E C + QG ++ KT + ++ P + +N ++ + ++ QA ENL +VC V
Sbjct: 141 EYCLKNTQGLEVMHYMAKKTRGLQPKMSHSPWITVNGEHSEFIQQQAMENLLQLVCTV 198
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 136 KKKTEDHKVKIAVYYESLCPDSKKFITTQLAP 231
K+ + KVK+AVYY S P+ ++F+ QL P
Sbjct: 20 KQTKKAEKVKLAVYYNSKNPEFRRFMVAQLYP 51
>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
Length = 1421
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 346 HSSAPWWQMNDHFPSTLS 293
HS+ +W NDHFPS+LS
Sbjct: 585 HSNHRYWYYNDHFPSSLS 602
>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
Length = 1171
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -3
Query: 570 ASVLSPYDASRLSPCSLDAHLSVYPTPT 487
AS+ SPY SRL+P L A L YP P+
Sbjct: 992 ASLTSPYTFSRLAPPRLTAPLGHYPHPS 1019
>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
Length = 1772
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = +3
Query: 417 VICLMNQTSPDKSLDTCLTQVDKMSESDKLKDAHPVNKETICSRRTVIKRML**DLSRSC 596
V+ +N+ D SL + P E +C+ R + + SRSC
Sbjct: 383 VVLKINKKEVDASLTQHKLPIRTQQNEITYNVTDPAGNENLCNFRVRVNDVEPPTCSRSC 442
Query: 597 PPLLLTRNTTK 629
PP ++ TTK
Sbjct: 443 PPDIIKELTTK 453
>SB_25297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = -2
Query: 517 CASFSLSDSDILST*VKHVSKDLSGLVWFMRHITISIFSV 398
C+ L S ++ V +++ +SG++WF+R + + + V
Sbjct: 288 CSLMLLHTSHLMDNEVSPITRLVSGILWFLRMVVLGVTKV 327
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +3
Query: 294 DKVDGKWSFICHHGADECYGNKVQACVLKDRNLQDTEKMEIVI-CLMNQTSPD---KSLD 461
++ D KW HG DE +Q C L +R + + + EI + ++ P+ SLD
Sbjct: 4004 EEQDNKWELFIKHGTDE-NPLHIQLCFLINRLIGNHVEKEIYLQAMLACRVPEDILPSLD 4062
Query: 462 TCLTQVDKMSESDKLKD 512
C D +S + D
Sbjct: 4063 RCGVAQDLLSSDKRTTD 4079
>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
Length = 2165
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +3
Query: 198 QQEVYNDATGSRLEGLQRTVKV-KMVPYGKSTHDKVDGKWSFICHHGADECYGNKVQACV 374
++E N+A L + + KV V Y H D + A+ + NKV + V
Sbjct: 223 KKEAKNEAKNDALSSIIKINKVISSVSYYTHRHTTADEEEWLTAERMAEWIHANKVLSIV 282
Query: 375 LKD--RNLQDTEKMEIVI 422
LKD Q EK+E +I
Sbjct: 283 LKDNLHQPQYVEKLEKII 300
>SB_13201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 33 FQKNHIIVFFPDIKQQDEDSPAGLLSDAALLCRGEEENRRP 155
F++ + VFF D+ + E +++ LL G E +RRP
Sbjct: 10 FRRRSVTVFFDDLLSESERQSGDNITNNELLPVGYERDRRP 50
>SB_56578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = -2
Query: 574 HSIRFITVRREQIVSLFTGCASFSLSDSDILST*VKHVSKDLSGLVWFMRHITISIFSVS 395
H I V + SLF G + + D S VK L L + RH+ IS++ ++
Sbjct: 362 HEAGQIDVLLRFVSSLFEGTNTLIILDDCAASKDVKRRFDQLVNLAFSARHVDISVWVIT 421
Query: 394 WRLRS 380
+L S
Sbjct: 422 QQLTS 426
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 401 GEDGDCNMPHEPDQPRQV 454
GE+G+C EP+ PRQ+
Sbjct: 173 GENGECQYSREPEPPRQI 190
>SB_1245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 359 GASLRPEGPQPPGHGEDGDCNMPHEPDQPRQVFGHVLNSSGQDVGV 496
G SL P +GD +P D PR++ H+L + D G+
Sbjct: 11 GRSLNPAIDVGQSRAAEGDYKIPSLRDIPREMNVHILKNMRNDKGI 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,635,121
Number of Sequences: 59808
Number of extensions: 543323
Number of successful extensions: 1505
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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