Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30315
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.3  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 139 SSPRHSRAASESKPAGESSSCCF 71
           SSP+HS +++ + PA  ++S  +
Sbjct: 67  SSPQHSGSSASTSPAARTTSSMY 89


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 679 NAAHNRLQVLEGLSF-DIFVVFLVNNN 602
           +A+HNR+  L  LS  D   +  +NNN
Sbjct: 601 DASHNRITELSPLSVPDSVELLFINNN 627


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 300 VDGKWSFICHHG 335
           +DG   F+CH+G
Sbjct: 800 IDGNVVFVCHNG 811


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 68  IRKKNDYMIFLKLPRTITSR 9
           +++  +YM + KLPR +  R
Sbjct: 392 VKQVEEYMAYRKLPREMRQR 411


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 68  IRKKNDYMIFLKLPRTITSR 9
           +++  +YM + KLPR +  R
Sbjct: 360 VKQVEEYMAYRKLPREMRQR 379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,384
Number of Sequences: 438
Number of extensions: 4228
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)