BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30313 (735 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 95 1e-20 SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe... 27 2.1 SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 26 6.4 SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 26 6.4 SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 25 8.5 SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 8.5 >SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit |Schizosaccharomyces pombe|chr 3|||Manual Length = 214 Score = 94.7 bits (225), Expect = 1e-20 Identities = 40/66 (60%), Positives = 56/66 (84%) Frame = +1 Query: 502 KPIRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDI 681 K +R+I+M+GL+WG SKLVPVG+G+NK QI V+EDDKVS++ L E+++ FED+VQS DI Sbjct: 149 KAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLEALQEELEGFEDYVQSTDI 208 Query: 682 AAFNKI 699 AA +K+ Sbjct: 209 AAMSKL 214 Score = 67.3 bits (157), Expect = 2e-12 Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Frame = +3 Query: 36 MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQI 212 M D+ + GL LN +L +KS++ GY PSQAD VF+ VG AP A P+ RWY QI Sbjct: 1 MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60 Query: 213 ASYTSA 230 A+Y A Sbjct: 61 ATYDLA 66 Score = 48.4 bits (110), Expect = 1e-06 Identities = 25/59 (42%), Positives = 31/59 (52%) Frame = +2 Query: 326 VDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEME 502 +DLFGS + Y KK+ KP + KS + LDVKPWDDET M E+E Sbjct: 91 IDLFGSDEEEDPEAERIKAERVAE-YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELE 148 >SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 422 Score = 27.5 bits (58), Expect = 2.1 Identities = 16/54 (29%), Positives = 24/54 (44%) Frame = -1 Query: 729 YKYITCYGCLDFVKCSNVNRLYKIFKFLNFFCQQINRNFVVLDDTHNLQFIYAI 568 ++ ITC LD + N N +Y + + I ++ L D H FIY I Sbjct: 80 HRNITCIYDLDIINPYNFNEVYIYEELMEADLNAIIKSGQPLTDAHFQSFIYQI 133 >SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual Length = 264 Score = 25.8 bits (54), Expect = 6.4 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +1 Query: 574 INKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNK 696 INK Q+M E ++ ++DLL++ EF + + D+ K Sbjct: 151 INKWQVMTAFELNEENLDLLSQYCSEF--LIHAADVEGLCK 189 >SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 497 Score = 25.8 bits (54), Expect = 6.4 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +1 Query: 127 LKLMFKYLSKLARRRPLTFPTYYDGIIKLLHTLRLNAKHGLRAQP 261 L + +LSK A R + + GI+ L+ L L+ H +R QP Sbjct: 361 LVFLSTFLSKWAEDRDMMLYGFILGILALVVHLVLDVLHKVRVQP 405 >SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomerase|Schizosaccharomyces pombe|chr 2|||Manual Length = 361 Score = 25.4 bits (53), Expect = 8.5 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = +3 Query: 12 KVATLKETMAVGDVKTAQGLNDLNQYLAEKSYV 110 K TLK + V DVKT G + N E Y+ Sbjct: 251 KTRTLKGGVVVTDVKTGSGASATNGKKVEMRYI 283 >SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosaccharomyces pombe|chr 2|||Manual Length = 695 Score = 25.4 bits (53), Expect = 8.5 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = +3 Query: 267 PPVLNPRLPPQQRKTTMTT 323 PPVL P LPP Q T T+ Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,717,357 Number of Sequences: 5004 Number of extensions: 54255 Number of successful extensions: 160 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 159 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 347244562 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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