Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30313
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...    86   3e-17
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...    85   4e-17
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...    84   1e-16
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    36   0.025
02_04_0193 - 20801959-20802583,20803372-20803448,20803530-208036...    28   6.7  

>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 44/67 (65%), Positives = 51/67 (76%), Gaps = 3/67 (4%)
 Frame = +1

Query: 508 IRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVD-LLTEKIQE--FEDFVQSVD 678
           +R+++MEGL WGASKLVPVGYGI KLQIM  I DD VSVD L+ E + E    +FVQS D
Sbjct: 158 VRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCD 217

Query: 679 IAAFNKI 699
           I AFNKI
Sbjct: 218 IVAFNKI 224



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 25/57 (43%), Positives = 36/57 (63%)
 Frame = +3

Query: 48  DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIAS 218
           D+ TA GL  L Q+L+ K+YVSG   S+ D++VF  V   P A  P+  RWY+ +A+
Sbjct: 7   DLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAA 63



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 22/33 (66%), Positives = 25/33 (75%)
 Frame = +2

Query: 404 ADKKSKKPALIAKSSILLDVKPWDDETDMKEME 502
           A K S K     KSS+LLDVKPWDDETDMK++E
Sbjct: 123 ASKASSKKKESGKSSVLLDVKPWDDETDMKKLE 155


>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 43/67 (64%), Positives = 49/67 (73%), Gaps = 3/67 (4%)
 Frame = +1

Query: 508 IRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVD 678
           +R ++MEGLLWGASKLVPVGYGI KLQIM  I DD VSVD L E     +   +F+QS D
Sbjct: 179 VRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCD 238

Query: 679 IAAFNKI 699
           I AFNKI
Sbjct: 239 IVAFNKI 245



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 24/61 (39%), Positives = 40/61 (65%)
 Frame = +3

Query: 36  MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 215
           + + +V +  GL  L++YL  +SY+SGY  S+ D+ VF  +  APAA+  +V RWY+ I+
Sbjct: 22  ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81

Query: 216 S 218
           +
Sbjct: 82  A 82



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/36 (61%), Positives = 26/36 (72%)
 Frame = +2

Query: 395 KAYADKKSKKPALIAKSSILLDVKPWDDETDMKEME 502
           +A A K S K     KSS+LLDVKPWDDETDM ++E
Sbjct: 141 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLE 176


>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 42/67 (62%), Positives = 49/67 (73%), Gaps = 3/67 (4%)
 Frame = +1

Query: 508 IRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVD 678
           +R ++MEGLLWGASKLVPVGYGI KLQIM  I DD VSVD L E     +   +++QS D
Sbjct: 163 VRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCD 222

Query: 679 IAAFNKI 699
           I AFNKI
Sbjct: 223 IVAFNKI 229



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 20/55 (36%), Positives = 33/55 (60%)
 Frame = +3

Query: 48  DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI 212
           +V +  GL  L++YL  +SY+SGY  S  D+ V+     AP+++  +V RW+  I
Sbjct: 7   NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHI 61



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/36 (61%), Positives = 26/36 (72%)
 Frame = +2

Query: 395 KAYADKKSKKPALIAKSSILLDVKPWDDETDMKEME 502
           +A A K S K     KSS+LLDVKPWDDETDM ++E
Sbjct: 125 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLE 160


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
 Frame = +3

Query: 69  LNDLNQYLAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 212
           L +LNQ L++KS +  +G+ PS AD+ VF  +       G+      PHVLRW + I
Sbjct: 76  LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132


>02_04_0193 -
           20801959-20802583,20803372-20803448,20803530-20803646,
           20804147-20804250,20804359-20804428,20804547-20804644,
           20804747-20804840,20805269-20805359,20805453-20805545,
           20805635-20805960,20806162-20806641
          Length = 724

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +3

Query: 123 PSQADVQVFEQVGKAPA-ANLPHVLRWYNQIASYTSAERKTWSQGPAH*PPVLNPRLPPQ 299
           P    ++ F    KA   A +  ++ W + + SY+       S+ P+  P    P  PP 
Sbjct: 528 PDVIKIETFYHADKAKTEACILDLVLWLHHLISYSRPSNGGRSRSPSRSPVRSPPLTPPH 587

Query: 300 QRKTTMTTT 326
           Q  TT +++
Sbjct: 588 QVPTTTSSS 596


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,071,674
Number of Sequences: 37544
Number of extensions: 370127
Number of successful extensions: 929
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)