Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30313
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   5e-22
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   7e-08
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)               55   7e-08
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)                 54   9e-08
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   5.2  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =  101 bits (243), Expect = 5e-22
 Identities = 47/66 (71%), Positives = 56/66 (84%)
 Frame = +1

Query: 502 KPIRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDI 681
           K +R+I+ +GLLWGASKLVP+ YGI KLQI  V+EDDK+S D L E+I +FEDFVQSVDI
Sbjct: 160 KLVRSIQADGLLWGASKLVPLAYGIKKLQITVVVEDDKISTDFLEEEICKFEDFVQSVDI 219

Query: 682 AAFNKI 699
           AAFNKI
Sbjct: 220 AAFNKI 225



 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 36/62 (58%), Positives = 44/62 (70%)
 Frame = +3

Query: 36  MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 215
           M  GD+K+  GL+ LN +L E+SY+ GY PSQAD  VFE +  AP A+LPH LRWYN I 
Sbjct: 1   MGFGDLKSQAGLSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIV 60

Query: 216 SY 221
           SY
Sbjct: 61  SY 62



 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 33/59 (55%), Positives = 39/59 (66%)
 Frame = +2

Query: 326 VDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEME 502
           +DLFGS                LKAY +KK+KK  +IAKS+I+LDVKPWDDETDM EME
Sbjct: 101 IDLFGSDDEEEEKEAARIRQERLKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEME 159


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +3

Query: 117 YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 221
           Y PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
          Length = 416

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = +1

Query: 547 SKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDF 663
           +KLV + YG+ KLQI CVIED KVS D L +K+ EFEDF
Sbjct: 116 TKLVEIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFEDF 154


>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
          Length = 301

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +1

Query: 550 KLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDF 663
           KLV + YG+ KLQI CVIED KVS D L +K+ EFEDF
Sbjct: 2   KLVEIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFEDF 39


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 69  LNDLNQYLAEKSYVSGYTPSQADVQ-VFEQVGK 164
           +N L + L EKS+  GY+P+ +DVQ V + V K
Sbjct: 62  VNKLPKGLIEKSWNFGYSPNTSDVQTVMQNVAK 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,480,612
Number of Sequences: 59808
Number of extensions: 408236
Number of successful extensions: 914
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)