Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30312
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    28   1.1  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   1.9  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    27   2.6  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    26   5.9  

>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -1

Query: 277 LFELFAGLNFISVVLKVE-EVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFS 101
           + +LFA +   SV L  +  + + +  P +      +T LAA    R    V  N +KFS
Sbjct: 216 ILKLFANIVANSVALTHDYSLQQSHEDPIIEPDNKFLTELAAYFYFRQQGWVVKNGTKFS 275

Query: 100 EEVILY 83
            + +LY
Sbjct: 276 VDFLLY 281


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 263 EEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDV 430
           EE  ED   G    + CT + N    + +  D +E   +   GP E++  M+  DV
Sbjct: 220 EETNEDDLLGQS-PTACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDV 274


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 435 APESTRSSKRTLLRGRESVPPIHEHPR 515
           AP++T SS   L + ++S+P  +EH R
Sbjct: 128 APQTTASSNTQLTQQQQSLPQTNEHQR 154


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 513 RHNYVYLASILYISPF*LYCKTNFSFHI-SHRLPFELQK 626
           +H Y+YLA  L+     L C   F F++ ++R  F L K
Sbjct: 63  KHRYIYLAVCLFFLASVLSCAIIFRFYLHTNRENFSLFK 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,138
Number of Sequences: 5004
Number of extensions: 52504
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)