Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30312
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242 31 1.2
02_01_0562 + 4129852-4130235,4130355-4130453,4131046-4131146,413... 29 2.7
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605... 29 4.7
11_03_0084 + 9696368-9696554,9696648-9696718,9696821-9696901,969... 28 6.2
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965... 28 6.2
05_07_0010 - 27024013-27024171,27024286-27024699,27025389-270254... 28 8.1
04_01_0285 - 3794628-3794801,3794935-3795090,3795232-3795729 28 8.1
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733... 28 8.1
>09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242
Length = 509
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -1
Query: 349 LLDLLQGVAFECAYGFHL--STVSAVLFELFAGLNFISVVLKVEEVTKLYSSPSL 191
L+D+L G+ + +GFHL S + A++ ++FAG S +++L +PS+
Sbjct: 274 LVDVLIGLQGKGGFGFHLDNSKIKAIILDMFAGGTGTSASAMEWGMSELMRNPSV 328
>02_01_0562 +
4129852-4130235,4130355-4130453,4131046-4131146,
4131229-4131300,4131712-4131802,4132005-4132085,
4132263-4132331,4132634-4132690,4132776-4132898,
4133000-4133038,4133255-4133380
Length = 413
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 513 RHNYVYLASILYISPF*LYCKTNFSFHISHRLPFELQKR 629
RH + LA LY + F LYCK + R+P + KR
Sbjct: 256 RHALLILADHLYYNKFELYCKPVTGITVGTRVPGFIPKR 294
>02_02_0007 +
6056281-6057024,6057273-6057539,6057622-6057765,
6057844-6058191,6058713-6059102
Length = 630
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Frame = -1
Query: 376 VSDFKTVGGLLD---LLQGVAFECAYGFHLSTVSAVLFELFAGLNFISVVLKVEEVTKLY 206
+ DF T G+ +L G +G+ ++ L G+ F S++L E +T L
Sbjct: 396 MGDFSTATGIATFTMMLLGRVILRKFGWGVAATITPAVLLLTGVGFFSLILFGEPLTPLM 455
Query: 205 SSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFS 101
+ T+G+T L A + +F S+K+S
Sbjct: 456 A-------TLGMTPLLAAVYVGAMQNIFSKSAKYS 483
>11_03_0084 +
9696368-9696554,9696648-9696718,9696821-9696901,
9697139-9697206,9697335-9697437,9700422-9700567,
9700686-9700803,9701693-9701797,9702333-9702434,
9702518-9702655,9703475-9703603,9703682-9703762,
9703883-9703957,9704861-9705028,9705125-9705242,
9705345-9705409,9705547-9705637,9705801-9705885,
9706006-9706084,9706317-9706414,9707029-9707137,
9707224-9707292,9707770-9707835,9707952-9708041,
9708416-9708526
Length = 850
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 389 GPEEMKAVMTAKDVTCTRVYKVQ*KDSTPRSGVGAADSR 505
G + ++ M AKD T +V +V KD S VG ADS+
Sbjct: 159 GMDVVEMAMWAKDNTTVKVTQVSTKDGPIESLVGEADSQ 197
>03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,
9652201-9652287,9652657-9653669,9653832-9654854,
9654946-9654969
Length = 1029
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 293 HRQRGPLRTLRRAELHLSGLEG*RGD*IVFVTILTELHGRGD 168
H RG R +RR +H G+EG + + L ELH + +
Sbjct: 896 HDDRGMQRNMRRCGMHHGGVEGDSFEPHLHPAQLAELHAKAE 937
>05_07_0010 -
27024013-27024171,27024286-27024699,27025389-27025445,
27025544-27025637,27025775-27025868,27025949-27026117,
27026450-27026554,27026665-27026784,27027190-27027735
Length = 585
Score = 27.9 bits (59), Expect = 8.1
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Frame = -1
Query: 406 FHLLRA-EFPDVSDFKTVGGLLDLLQGVAFECAYGFHLSTVSAVLFELFAGLNFISVVLK 230
F L+++ EFP + K +G + DL +G+A E + TV L GL+ +V +
Sbjct: 246 FDLMQSKEFPYNVETKILGDVQDLPKGIARENKI---IQTVMRQLLFALDGLHSTGIVHR 302
Query: 229 -VEEVTKLYSSPSLRSSTVGVTALAALRV-IRPTPMVFMNSSKFS 101
V+ ++S S + + A A LRV I P F+ +++
Sbjct: 303 DVKPQNVIFSEGSRTFKIIDLGAAADLRVGINYIPSEFLLDPRYA 347
>04_01_0285 - 3794628-3794801,3794935-3795090,3795232-3795729
Length = 275
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 480 RESVPPIHEHPRHNYVYLASILYISPF*LYCKTNFSFHI 596
R V H HP+H +V + ++ ++ L C + S+H+
Sbjct: 64 RRDVQVTHYHPKHFFVTFSRVVVLTSPRLDCPSRRSYHL 102
>01_06_0061 -
26071984-26072343,26072792-26073139,26073228-26073371,
26073454-26073723,26075019-26075825
Length = 642
Score = 27.9 bits (59), Expect = 8.1
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Frame = -1
Query: 397 LRAEFPD-------VSDFKTVGGLLD---LLQGVAFECAYGFHLSTVSAVLFELFAGLNF 248
L+A+FP + DF T G+ +L G +G+ ++ + L G+ F
Sbjct: 404 LKAQFPSPNEYSSFMGDFSTATGIATFTMMLLGRIILRKFGWGVAAMITPTVLLLTGVGF 463
Query: 247 ISVVLKVEEVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFS 101
S++L + +T P L +T+G+T L A + +F S+K+S
Sbjct: 464 FSLILFGQPLT-----PML--ATMGMTPLLAAVYVGALQNIFSKSAKYS 505
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,453,414
Number of Sequences: 37544
Number of extensions: 380208
Number of successful extensions: 1000
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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