Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30312
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.39 
SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                28   6.3  
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)                 28   8.3  
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 260 GEEFEEDRADGAKVKSVCTFEGNTLK 337
           G+E E+D  DG+K  S CTFEG T++
Sbjct: 25  GDEHEKDLRDGSKRISGCTFEGITMQ 50


>SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 154 KPPTLSPRPWSSVRMVTNTI 213
           KP  L P PW  VR+ TN I
Sbjct: 56  KPNPLGPEPWYKVRLPTNVI 75


>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 854

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 154 KPPTLSPRPWSSVRMVTNTI 213
           KP  L P PW  VR+ TN I
Sbjct: 81  KPNPLGPEPWYKVRLPTNVI 100


>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
          Length = 747

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 136 TPMVFMNSSKFSEEVILYFLPTNSIFID*LYRFKRKVFNASVF 8
           TP++ + +SK    ++++F P NS+    LY F  K F   +F
Sbjct: 527 TPLIDVTASK---TLLVFFFPINSLCNPFLYAFFTKAFKRELF 566


>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2179

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 23/73 (31%), Positives = 32/73 (43%)
 Frame = +3

Query: 192  KDGDEYNLVTSSTFKTTEMKFSPAKSSKRTALTVLR*NPYAHSKATP*SKSRRPPTVLKS 371
            K    Y  +TSS   T   K + ++S+ R A      +   H+K T    S +  T+   
Sbjct: 1710 KSSTRYAKLTSSKSTTYHAKLTSSESATRYAKRTSSKSTTYHAKLT----SSKSATLYAK 1765

Query: 372  LTSGNSALRR*KL 410
            LTS  SA R  KL
Sbjct: 1766 LTSSKSATRYAKL 1778


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,780,852
Number of Sequences: 59808
Number of extensions: 411559
Number of successful extensions: 1091
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)