Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30312
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24880.1 68418.m02946 expressed protein ; expression supporte...    28   6.8  
At4g03480.1 68417.m00475 ankyrin repeat family protein contains ...    28   6.8  
At3g19970.1 68416.m02527 expressed protein                             28   6.8  
At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal hydrolase-r...    27   9.0  
At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to...    27   9.0  
At1g27040.2 68414.m03296 nitrate transporter, putative contains ...    27   9.0  
At1g27040.1 68414.m03297 nitrate transporter, putative contains ...    27   9.0  

>At5g24880.1 68418.m02946 expressed protein ; expression supported
           by MPSS
          Length = 443

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 2   GAKNRRIKNLSLKSIKLIYKNGIRRQEIQDDFLREL**VHEDHRRGSDH 148
           G++N RIK  S K I L   +       Q+D   E+  V  DH + SDH
Sbjct: 173 GSENVRIKKASDKEIAL---DSASMSSAQEDHQEEILKVESDHLQVSDH 218


>At4g03480.1 68417.m00475 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 617

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 304 IRMHIRRQHPEASPEGPRRS*SHLRQGIRP 393
           +R H+ R  PEASP  P  S S+ R  + P
Sbjct: 2   VRSHLLRATPEASPLKPASSPSNCRLSLSP 31


>At3g19970.1 68416.m02527 expressed protein
          Length = 434

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -1

Query: 289 VSAVLFELFAGLNFIS-VVLKVEEVTKLYSSPSLRSSTVGVTALAALRVI 143
           VS V     A L+F+S + + V  V  L S+PS   +T  VT+L+ALR +
Sbjct: 62  VSQVSASKLADLSFVSRICVPVPNVDLLASNPSCSLAT-SVTSLSALRSV 110


>At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1094

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = +3

Query: 318 SKATP*SKSRRPPTVLKSLTSGNSALRR*KL**QLRT*LAPESTRSSKRTLLRG 479
           SK  P SK RR  +  K  TS +S+L +  +  +    L PEST SS RT+  G
Sbjct: 736 SKEKPQSKKRRDRSKKKPSTSISSSLDK-TVEHKPSVNLKPESTSSSLRTIEEG 788


>At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to
           nitrate transporter (NTL1) GI:3377517 [Arabidopsis
           thaliana]
          Length = 585

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 87  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDG 200
           K T +E     ++ IGVGL+    A AV   VE+++ G
Sbjct: 414 KATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKG 451


>At1g27040.2 68414.m03296 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 563

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 87  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 194
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 393 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 428


>At1g27040.1 68414.m03297 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 567

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 87  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 194
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 397 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,419,908
Number of Sequences: 28952
Number of extensions: 290642
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)