BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30309 (706 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 111 5e-25 SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 99 3e-21 SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20 SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 82 5e-16 SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30 SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.39 SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 31 1.2 SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 31 1.2 SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.1 SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 30 2.1 SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8 SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7 SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4 SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4 SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5 SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5 SB_16092| Best HMM Match : FixQ (HMM E-Value=2.5) 28 8.5 >SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) Length = 123 Score = 111 bits (267), Expect = 5e-25 Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 2/95 (2%) Frame = +3 Query: 264 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 443 +D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60 Query: 444 TREHALLAFTLGVKQLIVGVNK--WIPLNHHTVSP 542 TREHA+L +LGV QLIV +NK + L +H P Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95 >SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) Length = 547 Score = 99.1 bits (236), Expect = 3e-21 Identities = 42/83 (50%), Positives = 60/83 (72%) Frame = +3 Query: 261 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 440 T+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + G Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268 Query: 441 QTREHALLAFTLGVKQLIVGVNK 509 QTREHA+LA T GVK L++ VNK Sbjct: 269 QTREHAMLAKTAGVKHLVILVNK 291 Score = 44.0 bits (99), Expect = 1e-04 Identities = 17/41 (41%), Positives = 29/41 (70%) Frame = +1 Query: 133 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERER 255 Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++ Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDK 206 Score = 36.7 bits (81), Expect = 0.018 Identities = 13/32 (40%), Positives = 24/32 (75%) Frame = +2 Query: 506 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 601 +MD ++E R+EEIK +++ ++KK+G+NP Sbjct: 291 KMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322 >SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) Length = 106 Score = 97.1 bits (231), Expect = 1e-20 Identities = 44/49 (89%), Positives = 46/49 (93%) Frame = +1 Query: 49 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 195 M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+ Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49 >SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) Length = 322 Score = 81.8 bits (193), Expect = 5e-16 Identities = 36/38 (94%), Positives = 37/38 (97%) Frame = +3 Query: 258 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 371 ITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ Sbjct: 23 ITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60 Score = 48.8 bits (111), Expect = 4e-06 Identities = 21/21 (100%), Positives = 21/21 (100%) Frame = +1 Query: 193 MGKGSFKYAWVLDKLKAERER 255 MGKGSFKYAWVLDKLKAERER Sbjct: 1 MGKGSFKYAWVLDKLKAERER 21 Score = 31.5 bits (68), Expect = 0.69 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = +2 Query: 644 NMLEPSTKMPWFKGWQVER 700 NM+ +++MPWFK W +ER Sbjct: 53 NMITGTSQMPWFKQWTIER 71 >SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 545 Score = 32.7 bits (71), Expect = 0.30 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +3 Query: 306 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410 +T ID PGH F G + D VL+VAA G Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112 >SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) Length = 833 Score = 32.3 bits (70), Expect = 0.39 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = +1 Query: 49 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 144 M K+ N+ VI HVD GKST T L+ K G Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43 Score = 28.3 bits (60), Expect = 6.4 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = +3 Query: 300 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410 + + +ID+PGH DF + D A+++V +G Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135 >SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) Length = 541 Score = 30.7 bits (66), Expect = 1.2 Identities = 17/65 (26%), Positives = 29/65 (44%) Frame = +3 Query: 315 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 494 +D PGH + M+ G + D A+L++A QT EH + +K ++ Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122 Query: 495 VGVNK 509 + NK Sbjct: 123 ILQNK 127 >SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) Length = 359 Score = 30.7 bits (66), Expect = 1.2 Identities = 11/51 (21%), Positives = 25/51 (49%) Frame = +3 Query: 258 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410 I++ ++ F + I+D PGH+DF ++ + D ++++ G Sbjct: 65 ISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115 >SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) Length = 783 Score = 29.9 bits (64), Expect = 2.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 312 IIDAPGHRDFIKNMITGTSQADCAVLIV 395 IID PGH F G+S D A+L+V Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709 >SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) Length = 240 Score = 29.9 bits (64), Expect = 2.1 Identities = 13/48 (27%), Positives = 20/48 (41%) Frame = +3 Query: 258 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 401 IT I + + + +D PGH F G D +++VAA Sbjct: 124 ITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171 >SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 539 Score = 29.5 bits (63), Expect = 2.8 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = +1 Query: 64 THINIVVIGHVDSGKSTTTGHLIY 135 T I + V+G+V+SGKST G L Y Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134 >SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2670 Score = 29.1 bits (62), Expect = 3.7 Identities = 22/61 (36%), Positives = 27/61 (44%) Frame = +1 Query: 73 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 252 N ++ HVD GKST L+ G I K + K VLDKL+ ERE Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986 Query: 253 R 255 R Sbjct: 1987 R 1987 >SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 476 Score = 28.3 bits (60), Expect = 6.4 Identities = 8/25 (32%), Positives = 14/25 (56%) Frame = +2 Query: 632 WHGDNMLEPSTKMPWFKGWQVERKE 706 +H DN + PWF+ W +++E Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215 >SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3112 Score = 28.3 bits (60), Expect = 6.4 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Frame = +2 Query: 515 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 655 ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113 >SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 919 Score = 27.9 bits (59), Expect = 8.5 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -1 Query: 688 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 578 P+LEP + G L + S S GH+ D+ ++ LL+ Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414 >SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 730 Score = 27.9 bits (59), Expect = 8.5 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Frame = +1 Query: 121 GHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERVSQSILLSGSSKLAS 300 GH G T E + ++M K F Y ++LDK E ++ SQ I + + S Sbjct: 389 GHSTTSKDGALAETKIATEDKVKKMEKVLFDYRFLLDKSNFELQQHSQHIEAVRKNAVES 448 Query: 301 TMLPSLMLLD--TEISSRT 351 + L D TE+ S+T Sbjct: 449 ITSAIIKLKDFQTEVESKT 467 >SB_16092| Best HMM Match : FixQ (HMM E-Value=2.5) Length = 250 Score = 27.9 bits (59), Expect = 8.5 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Frame = +1 Query: 148 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERVSQSI--LLSGSSKLASTMLPSLM 321 IDK T K+EK+ E K K A++ DK + + V +I L + L + +LP+ + Sbjct: 81 IDKATDAKYEKQNNEADK--TKGAFISDKESVKEDEVPDNIAELQQEAKDLDTIVLPTEV 138 Query: 322 LLDTE 336 D E Sbjct: 139 NKDVE 143 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,757,222 Number of Sequences: 59808 Number of extensions: 480151 Number of successful extensions: 1444 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1311 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1443 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1853669818 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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