Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30308X
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 58 6e-10
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 3e-06
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 27 0.94
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 2.9
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 2.9
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 3.8
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 3.8
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 25 3.8
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 5.0
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 5.0
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 25 5.0
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 25 6.7
SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy... 25 6.7
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 24 8.8
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 24 8.8
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 24 8.8
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 24 8.8
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 24 8.8
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 58.0 bits (134), Expect = 6e-10
Identities = 25/58 (43%), Positives = 37/58 (63%)
Frame = +3
Query: 255 IRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKS 428
++QVE+YF D NL DKFL + +DGWVP++ + F R+ + + + I NAL KS
Sbjct: 68 LKQVEFYFSDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRF-QPLEAIVNALRKS 124
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 46.0 bits (104), Expect = 3e-06
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +3
Query: 261 QVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKS 428
Q+EYYF NL +D FL++ + D+G+VPL L FNR+ + D +++ A S
Sbjct: 332 QLEYYFSIENLCKDMFLRKHMD-DEGYVPLAFLASFNRIKSFSTDLNLLHAACKAS 386
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 27.5 bits (58), Expect = 0.94
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -2
Query: 339 IRHLILFVLAEIYLDVDLHHQNNIRLAEYRN 247
I +++ F +Y+D+D+HH + ++ A Y +
Sbjct: 177 ILNMLRFFPRVLYIDIDIHHGDGVQQAFYES 207
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 2.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 157 MTEDKEVTVETNGQEENAKTENSEDE 234
+ ED V + +E N + EN+EDE
Sbjct: 464 LVEDTSVDISATLEEANTQQENAEDE 489
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 2.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 334 SSNFICSCRNLSRC 293
S NF+CSCR S C
Sbjct: 7 SRNFLCSCRGFSVC 20
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 124 KESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETEL 243
+E+ + E ++ ED++V +ET+ +E K +TE+
Sbjct: 241 EEAVEAMEEDEVAEDEDVVLETSISQEEEKKNIENPDTEV 280
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 118 SIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETEL 243
S +E+ + +PE + T + T E +EE + E E+E E+
Sbjct: 331 SEEEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEEEEEEEV 372
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 3.8
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +1
Query: 109 KVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETE 240
K F +K + R + E+K + D+E +V+ +E+ +K E+ + + +
Sbjct: 44 KAFLLKMAKRSVEELKRSADEEASVKR--KEKKSKHEHKKHKKD 85
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 5.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 186 FNSYLFVLGHFDFWNNTMRFFNGKYLLISENKFIEASKLRYTR 58
F+SY V+ F +NNT FF G ++ N A + Y R
Sbjct: 132 FSSYQSVIDTFQKYNNTGAFFAGNEVV---NNASNAPAVAYVR 171
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 376 RRLNFVRISNGTHPSSNFICSCRNLSRCRF 287
R N R+ + P+SN +C RN S+CRF
Sbjct: 352 RSSNRFRLFPASTPNSNGLC--RNDSKCRF 379
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 124 KESHRVIPEIKMTEDKEVTVETNGQEENAKTENSED 231
K SH+ ++K +DK + G+ E AK ED
Sbjct: 55 KASHKRSKKLKAHQDKAESKVNEGKNEAAKVVKEED 90
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 24.6 bits (51), Expect = 6.7
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +1
Query: 103 NQKVFSIKE---SHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELDI 249
N +V KE S+ V PE+++TE ++ E+N E T +E EL +
Sbjct: 59 NAEVKEFKETTKSNGVKPEVEITESTKIQKESN-TEPCISTGGKVEEKELKV 109
>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 136
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +1
Query: 148 EIKMTEDKEVTVETNGQEENAKTENSEDETELD 246
EIK + +++ + + N KTEN D++ ++
Sbjct: 103 EIKEKAENNASLKNDEDDLNTKTENKTDDSSVE 135
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.2 bits (50), Expect = 8.8
Identities = 8/20 (40%), Positives = 8/20 (40%)
Frame = +2
Query: 359 HKIQSPCQTDRGHRCHRKCP 418
H PC RG C CP
Sbjct: 276 HSCGDPCGKTRGQDCEHPCP 295
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 166 DKEVTVETNGQEENAKTENSEDETELDIAIFGKSNI 273
+ EV EEN + ENS T ++I + + N+
Sbjct: 48 ESEVIQTPTSVEENNEDENSMSTTTIEIPVVKRRNL 83
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 118 SIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETE 240
S K S I K + + +V+++ E + + +SEDET+
Sbjct: 128 SNKNSEVSIKRRKTESNSQESVDSSNSESSDEESDSEDETQ 168
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 24.2 bits (50), Expect = 8.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +1
Query: 118 SIKESHRVIPEIKMTEDKEVTVETNGQ---EENAKTENSEDE 234
S+KES E K T D +ETN EE+++ E EDE
Sbjct: 173 SLKESDFESEE-KATNDNNGLIETNHNSKLEESSEHEEEEDE 213
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 142 IPEIKMTEDKEVTVETNGQEENAKTENSEDET 237
+PE T EV E N +EN +N E T
Sbjct: 293 VPESTTTNTTEVLKELNDIQENKSRKNVEKAT 324
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,657,708
Number of Sequences: 5004
Number of extensions: 31842
Number of successful extensions: 114
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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