Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30308X
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)                    56   2e-08
SB_13046| Best HMM Match : La (HMM E-Value=5e-23)                      47   6e-06
SB_7622| Best HMM Match : Arfaptin (HMM E-Value=0)                     30   0.72 
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         29   2.2  
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   2.9  
SB_15630| Best HMM Match : p450 (HMM E-Value=0)                        28   2.9  
SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30)               28   3.8  
SB_1572| Best HMM Match : Drf_FH1 (HMM E-Value=0.27)                   28   3.8  
SB_41386| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_32578| Best HMM Match : Methyltransf_2 (HMM E-Value=2.2e-17)        27   6.7  
SB_31931| Best HMM Match : Nucleoplasmin (HMM E-Value=1.9)             27   6.7  
SB_14414| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_1006| Best HMM Match : GPP34 (HMM E-Value=3.6)                      27   8.8  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_29514| Best HMM Match : MotA_ExbB (HMM E-Value=0.21)                27   8.8  
SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)
          Length = 711

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 22/50 (44%), Positives = 37/50 (74%)
 Frame = +3

Query: 258 RQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVI 407
           RQ+EYYF + NLH+D FL++Q+  D+G++P+ ++  F R+  LT D ++I
Sbjct: 127 RQIEYYFSEANLHKDFFLRKQMD-DEGYIPIALIASFYRVQALTHDMNLI 175


>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
          Length = 442

 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 19/57 (33%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
 Frame = +3

Query: 261 QVEYYFGDVNLHRDKFLQEQIK-LDDGWVPLEILTKFNRLAKLTEDTDVIANALNKS 428
           Q+++YF D  L +D+FL++QI+   DG+V +  +  FN++ ++T+D  ++  A+  S
Sbjct: 32  QIDFYFSDSALLKDRFLKQQIENHPDGYVAISTIASFNKIKQMTDDIKLVKKAMKLS 88


>SB_7622| Best HMM Match : Arfaptin (HMM E-Value=0)
          Length = 641

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = +1

Query: 73  LRSLNKLVF*NQKVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELD 246
           L+SLN LV  N+K   IKE H    + +   DK+ T E  G+   AK  N +D+ + D
Sbjct: 294 LKSLNPLVTDNEKNDEIKEVHL---DQETHVDKKDT-ENAGEATEAKRSNDDDDDDDD 347


>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 106 QKVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELD 246
           ++V   +E   V  E +  E+KE  +E   +EE  + E  E+E E D
Sbjct: 39  EEVEKEEEEEEVEEEEEEEEEKEDEIEVEEEEEEKENEEEENEDEED 85


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 154 KMTEDKEVTVETNGQEENAKTENSEDE 234
           K+T+DK+V  E    EE  K E+  D+
Sbjct: 742 KLTQDKDVETENKNNEEKEKLEDDADQ 768


>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1321

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 124  KESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELD 246
            ++++ V P+ +   D E      GQE   +T + ED+T +D
Sbjct: 1148 EDTNGVRPDDEPLHDDEQDPNVAGQERGGRTNDEEDDTSVD 1188


>SB_15630| Best HMM Match : p450 (HMM E-Value=0)
          Length = 965

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 3   IKHVFFNLKAISLKLSGLTLYILTSKPQ*TCFLKSEGIFH*RISSCYSR 149
           ++ VF   +A S+  S  T+Y+L +  +    L  + ++H R S  YSR
Sbjct: 716 VRKVFITHRAQSIYYSRCTMYLLLTVHKVFITLGEQSLYHSRCSKDYSR 764


>SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30)
          Length = 824

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 151 IKMTEDKEVTVETNGQEENAKTENSEDE 234
           IK T    +  E+NG E NA  E+SEDE
Sbjct: 576 IKDTGMCNLAEESNGSESNATQEDSEDE 603


>SB_1572| Best HMM Match : Drf_FH1 (HMM E-Value=0.27)
          Length = 335

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 344 PIRNSHKIQSPCQTDRGHRCHRKCP 418
           P+   H+I   C+  + HR  ++CP
Sbjct: 84  PVTQDHRIPKRCRVTQDHRIPKRCP 108


>SB_41386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 9/41 (21%), Positives = 24/41 (58%)
 Frame = +1

Query: 106 QKVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSE 228
           Q+ +    +HR +P I+ +E+  +  E + +++  + EN++
Sbjct: 71  QRTYPSWHAHREVPAIRKSEESSLEDEEDDEDDEEEKENTD 111


>SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 115 FSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDE 234
           +S +   R++ E +  +D++   E   +EEN   EN EDE
Sbjct: 371 YSTRRRARLVSE-ETNDDEDEDEEEEEEEENEDEENGEDE 409


>SB_32578| Best HMM Match : Methyltransf_2 (HMM E-Value=2.2e-17)
          Length = 298

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 309 LQEQIKLD-DGWVPLEILTKFNRLAKLTEDTDVIANALNK 425
           L+   KLD +G+V    LTK+ R+  L   T  IA A+NK
Sbjct: 106 LRGSSKLDAEGFVTAFDLTKYKRICDLGGATGEIAQAVNK 145


>SB_31931| Best HMM Match : Nucleoplasmin (HMM E-Value=1.9)
          Length = 165

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 127 ESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETE 240
           ES+ ++  +K  E++E   E   +EE  + E  E+E E
Sbjct: 121 ESNMIMTTLKEEEEEEEEEEEEEEEEEEEEEEEEEEEE 158


>SB_14414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 2   Y*TRVFQFKSYFFKIVWPYLVYLNFEASINLFSEIRRYFPLKNLIVL 142
           Y T +  F++YF +     +++ +    + LF    RY+P+KN I++
Sbjct: 290 YATPLQAFENYFVRHCCHVMLHTSIPEDVKLF----RYYPIKNTILM 332


>SB_1006| Best HMM Match : GPP34 (HMM E-Value=3.6)
          Length = 426

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 163 EDKEVTVETNGQEENAKTENSED 231
           E +EV +ET   +E A TEN E+
Sbjct: 294 EKREVQIETEQTKEGASTENKEN 316


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 136  RVIPE-IKMTEDKEVTVETNGQEENAKTENSE 228
            RV+ E I+ T+DK   V  NGQE +A+    E
Sbjct: 2700 RVLHEPIETTQDKGERVPVNGQESSARINEQE 2731


>SB_29514| Best HMM Match : MotA_ExbB (HMM E-Value=0.21)
          Length = 368

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +2

Query: 68  LNFEASINLFSEIRRYFPLKNLIVLFQKSK*PRTKR*LLKPMDKRRTRKPKIQKTKPN 241
           L+ EA I++F EIR  FP   LI  F   +  + +  L    D  +  KP +    PN
Sbjct: 11  LSDEAKISIFQEIRDIFPNSKLI-SFNAFRRDKGRIWLFPDGDGAQVAKPMLVDGLPN 67


>SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1358

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +1

Query: 103 NQKVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELDIAI 255
           N+K  S  +  R   + ++   +E+ +E   + ENA+ +  E+E E ++A+
Sbjct: 59  NEKELSYIQEWRSKAKAEIQPFREMRLEIKKRLENARDQEKEEEMEKELAM 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,830,634
Number of Sequences: 59808
Number of extensions: 212881
Number of successful extensions: 1209
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)