Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30308X
(436 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003140-8|AAB54169.1| 396|Caenorhabditis elegans Hypothetical ... 85 2e-17
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 52 1e-07
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 52 1e-07
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 52 2e-07
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 52 2e-07
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 29 1.9
U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1... 28 3.4
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 28 3.4
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 28 3.4
AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR... 28 3.4
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 28 3.4
U97009-3|AAC69031.1| 619|Caenorhabditis elegans Hypothetical pr... 27 4.4
U80027-18|AAC48115.1| 198|Caenorhabditis elegans Hypothetical p... 27 4.4
AF040657-4|AAB95053.1| 261|Caenorhabditis elegans Hypothetical ... 27 4.4
AL032652-6|CAA21710.2| 752|Caenorhabditis elegans Hypothetical ... 27 5.9
Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical pr... 27 7.8
AF003740-8|AAC48136.1| 320|Caenorhabditis elegans Hypothetical ... 27 7.8
>AF003140-8|AAB54169.1| 396|Caenorhabditis elegans Hypothetical
protein C44E4.4 protein.
Length = 396
Score = 85.4 bits (202), Expect = 2e-17
Identities = 36/60 (60%), Positives = 49/60 (81%)
Frame = +3
Query: 255 IRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTS 434
I+Q+EYYFG++NL RDKFLQE++K DDGWVP+ + FNRLA +++DT+ IANA+ S S
Sbjct: 17 IKQLEYYFGNINLPRDKFLQEKLKEDDGWVPITTMLNFNRLASISKDTEKIANAVKNSGS 76
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 52.4 bits (120), Expect = 1e-07
Identities = 24/58 (41%), Positives = 38/58 (65%)
Frame = +3
Query: 261 QVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTS 434
Q+EYYF NL D++L+ Q+ D +VP+ +L F ++ +LT D D+I AL +ST+
Sbjct: 145 QLEYYFSRENLSSDRYLKCQMD-SDNYVPINVLAGFPKIMRLTTDVDLIVEALKESTN 201
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 52.4 bits (120), Expect = 1e-07
Identities = 24/58 (41%), Positives = 38/58 (65%)
Frame = +3
Query: 261 QVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTS 434
Q+EYYF NL D++L+ Q+ D +VP+ +L F ++ +LT D D+I AL +ST+
Sbjct: 47 QLEYYFSRENLSSDRYLKCQMD-SDNYVPINVLAGFPKIMRLTTDVDLIVEALKESTN 103
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 51.6 bits (118), Expect = 2e-07
Identities = 23/58 (39%), Positives = 38/58 (65%)
Frame = +3
Query: 258 RQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKST 431
+Q+EYYF + NL +D FL+ ++ +G++P+ ++ F R+ LTED +I AL ST
Sbjct: 329 KQIEYYFSEENLQKDFFLRRKMG-PEGYLPVALIASFPRVRSLTEDYSLILEALKDST 385
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 51.6 bits (118), Expect = 2e-07
Identities = 23/58 (39%), Positives = 38/58 (65%)
Frame = +3
Query: 258 RQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKST 431
+Q+EYYF + NL +D FL+ ++ +G++P+ ++ F R+ LTED +I AL ST
Sbjct: 526 KQIEYYFSEENLQKDFFLRRKMG-PEGYLPVALIASFPRVRSLTEDYSLILEALKDST 582
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 412 FAMTSVSSVSLARRLNFVRISNGTHPSSNFICSCRNLSRCRFTSP-K*YSTCR 257
F TS SS +L V++ + P + + +C N S C+++S + Y CR
Sbjct: 613 FCTTSSSSSNLCSAGQTVQLDSSNQPINCLVSTCPNNSFCQYSSSGQRYVCCR 665
>U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1,
isoform c protein.
Length = 942
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 35 FFKIVWPYLVYLNFEASINLFSEIRRYFPLKNLIVLFQK 151
F KI+ P+L++L F + +F R+ L LF K
Sbjct: 716 FMKIILPFLLFLAFATGVTMFFVNRKGHMLSTWCPLFTK 754
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 35 FFKIVWPYLVYLNFEASINLFSEIRRYFPLKNLIVLFQK 151
F KI+ P+L++L F + +F R+ L LF K
Sbjct: 716 FMKIILPFLLFLAFATGVTMFFVNRKGHMLSTWCPLFTK 754
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 35 FFKIVWPYLVYLNFEASINLFSEIRRYFPLKNLIVLFQK 151
F KI+ P+L++L F + +F R+ L LF K
Sbjct: 751 FMKIILPFLLFLAFATGVTMFFVNRKGHMLSTWCPLFTK 789
>AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR-1
protein.
Length = 942
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 35 FFKIVWPYLVYLNFEASINLFSEIRRYFPLKNLIVLFQK 151
F KI+ P+L++L F + +F R+ L LF K
Sbjct: 716 FMKIILPFLLFLAFATGVTMFFVNRKGHMLSTWCPLFTK 754
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 35 FFKIVWPYLVYLNFEASINLFSEIRRYFPLKNLIVLFQK 151
F KI+ P+L++L F + +F R+ L LF K
Sbjct: 716 FMKIILPFLLFLAFATGVTMFFVNRKGHMLSTWCPLFTK 754
>U97009-3|AAC69031.1| 619|Caenorhabditis elegans Hypothetical
protein T19H12.6 protein.
Length = 619
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -2
Query: 204 LLLSIG--FNSYLFVLGHFDFWNNTMRFFNGK 115
+LLS+G F S ++ F FWNN +R+F+ K
Sbjct: 540 VLLSLGDDFGSLIYSSSGF-FWNNKLRYFDVK 570
>U80027-18|AAC48115.1| 198|Caenorhabditis elegans Hypothetical
protein T28A11.3 protein.
Length = 198
Score = 27.5 bits (58), Expect = 4.4
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 246 YCDIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFN---RLAKLTEDT 398
YCD V Y + D RDK ++ K D W P+ + K N ++ +L +DT
Sbjct: 99 YCDA--VVYVYSDFAQCRDKLNAKKSKCFDDWDPIPNVHKENDPKKVEQLKKDT 150
>AF040657-4|AAB95053.1| 261|Caenorhabditis elegans Hypothetical
protein T20H9.4 protein.
Length = 261
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 160 TEDKEVTVETNGQEENAKTENSEDETELDIAIFGKSNIIL 279
TED TV NGQ++ + E ++ + D+A+ K IL
Sbjct: 52 TEDGGTTVHHNGQKKRIEGEQYKERSIKDLAVIFKHASIL 91
>AL032652-6|CAA21710.2| 752|Caenorhabditis elegans Hypothetical
protein Y63D3A.6b protein.
Length = 752
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 106 QKVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDE 234
QK F +K++ P+ + +E E + E+N+K +SEDE
Sbjct: 541 QKKF-VKKNAPASPDTEKALKEEAKEEDDDDEKNSKASDSEDE 582
>Z93239-2|CAB07529.2| 1218|Caenorhabditis elegans Hypothetical protein
H03A11.2 protein.
Length = 1218
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +1
Query: 103 NQKVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIFGKSNIIL 279
NQ+ F + + RVI + + + + + G++ +AKT + E+ +L I +S IIL
Sbjct: 1042 NQEDFIPRRNERVIRSVPI---QHKILSSEGRKFDAKTVHQEEFVDLTSDIVAQSGIIL 1097
>Z69660-2|CAD57697.1| 1218|Caenorhabditis elegans Hypothetical protein
H03A11.2 protein.
Length = 1218
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +1
Query: 103 NQKVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIFGKSNIIL 279
NQ+ F + + RVI + + + + + G++ +AKT + E+ +L I +S IIL
Sbjct: 1042 NQEDFIPRRNERVIRSVPI---QHKILSSEGRKFDAKTVHQEEFVDLTSDIVAQSGIIL 1097
>AF003740-8|AAC48136.1| 320|Caenorhabditis elegans Hypothetical
protein C41D11.1 protein.
Length = 320
Score = 26.6 bits (56), Expect = 7.8
Identities = 19/75 (25%), Positives = 33/75 (44%)
Frame = +1
Query: 82 LNKLVF*NQKVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIFG 261
L K++ V K+ + + E+K E+ +E G E K +NSE+ + + I
Sbjct: 117 LGKMIDTRSIVTPGKKYNFITFEVKQNENNSFDIEIVGGEVQGKEKNSEEPSAKEKIIQK 176
Query: 262 KSNIILVM*IYIEIN 306
+ VM + E N
Sbjct: 177 MEQVHEVMKVEYEYN 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,044,117
Number of Sequences: 27780
Number of extensions: 176207
Number of successful extensions: 804
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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