Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30308X
(436 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g66100.1 68418.m08327 La domain-containing protein similar to... 59 1e-09
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 57 6e-09
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 57 6e-09
At5g21160.1 68418.m02528 La domain-containing protein / proline-... 54 3e-08
At4g35890.1 68417.m05097 La domain-containing protein contains P... 46 1e-05
At2g43970.2 68415.m05468 La domain-containing protein contains P... 40 7e-04
At2g43970.1 68415.m05467 La domain-containing protein contains P... 40 7e-04
At1g79880.1 68414.m09333 La domain-containing protein contains P... 39 0.001
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 38 0.002
At3g19090.1 68416.m02426 RNA-binding protein, putative similar t... 37 0.005
At5g15430.1 68418.m01806 calmodulin-binding protein-related has ... 29 1.8
At3g13190.2 68416.m01651 myosin heavy chain-related contains wea... 29 1.8
At3g13190.1 68416.m01650 myosin heavy chain-related contains wea... 29 1.8
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 29 1.8
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 28 3.1
At2g41540.2 68415.m05134 NAD-dependent glycerol-3-phosphate dehy... 27 4.1
At2g41540.1 68415.m05133 NAD-dependent glycerol-3-phosphate dehy... 27 4.1
At1g53440.1 68414.m06057 leucine-rich repeat family protein / pr... 27 4.1
At1g31410.1 68414.m03847 putrescine-binding periplasmic protein-... 27 4.1
At5g22740.1 68418.m02656 glycosyl transferase family 2 protein s... 27 5.5
At3g13200.1 68416.m01652 Cwf15 / Cwc15 cell cycle control family... 27 5.5
At2g23700.1 68415.m02830 expressed protein contains Pfam profile... 27 5.5
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 27 5.5
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 27 7.2
At4g04635.1 68417.m00678 hypothetical protein 27 7.2
At2g30100.1 68415.m03663 ubiquitin family protein low similarity... 27 7.2
At1g17790.1 68414.m02202 DNA-binding bromodomain-containing prot... 27 7.2
At5g05490.2 68418.m00593 cohesion family protein SYN1, splice va... 26 9.5
At5g05490.1 68418.m00592 cohesion family protein SYN1, splice va... 26 9.5
At4g36030.1 68417.m05129 armadillo/beta-catenin repeat family pr... 26 9.5
At4g00238.1 68417.m00030 DNA-binding storekeeper protein-related... 26 9.5
At3g49410.1 68416.m05401 transcription factor-related contains w... 26 9.5
At3g17450.1 68416.m02228 hAT dimerisation domain-containing prot... 26 9.5
At2g07739.1 68415.m00990 expressed protein 26 9.5
>At5g66100.1 68418.m08327 La domain-containing protein similar to
SP|P40796 La protein homolog (La ribonucleoprotein) (La
autoantigen homolog) {Drosophila melanogaster}; contains
Pfam profile PF05383: La domain
Length = 453
Score = 59.3 bits (137), Expect = 1e-09
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = +3
Query: 255 IRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKS 428
+ QVEYYF NL RD+ L++Q+ D+GWVP+ ++ F RLA+LT + I AL S
Sbjct: 340 LTQVEYYFSADNLSRDEHLRDQMN-DEGWVPVRVIAAFRRLAELTNNIQTILEALRSS 396
>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 420
Score = 56.8 bits (131), Expect = 6e-09
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +3
Query: 255 IRQVEYYFGDVNLHRDKFLQEQIKLD-DGWVPLEILTKFNRLAKLTEDTDVIANALNKST 431
IRQVEYYF D NL DKFL +K + G+VP+ + F+++ KLT D +I +AL +S+
Sbjct: 108 IRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKESS 167
>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 422
Score = 56.8 bits (131), Expect = 6e-09
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +3
Query: 255 IRQVEYYFGDVNLHRDKFLQEQIKLD-DGWVPLEILTKFNRLAKLTEDTDVIANALNKST 431
IRQVEYYF D NL DKFL +K + G+VP+ + F+++ KLT D +I +AL +S+
Sbjct: 108 IRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKESS 167
>At5g21160.1 68418.m02528 La domain-containing protein /
proline-rich family protein contains proline-rich
extensin domains, INTERPRO:IPR002965, PF05383: La domain
Length = 826
Score = 54.4 bits (125), Expect = 3e-08
Identities = 26/60 (43%), Positives = 36/60 (60%)
Frame = +3
Query: 255 IRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTS 434
++QVEYYF D NL D +L + ++GWVP +I+ F R+ +T D D I AL S S
Sbjct: 283 LKQVEYYFSDENLENDHYLISLMD-EEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNS 341
>At4g35890.1 68417.m05097 La domain-containing protein contains Pfam
PF05383: La domain
Length = 523
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/57 (36%), Positives = 37/57 (64%)
Frame = +3
Query: 258 RQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKS 428
+Q++YYF D NL D +L+ + ++G+VPL ++ F ++A+LT++ I AL S
Sbjct: 375 KQIQYYFSDENLITDIYLRGFMN-NEGFVPLRVVAGFKKVAELTDNIQQIVEALQNS 430
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 39.9 bits (89), Expect = 7e-04
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 255 IRQVEYYFGDVNLHRDKFLQEQIKLD-DGWVPLEILTKFNRLAKLTEDTDVIANALNKS 428
+ QVEYYF D+NL L I D +G+VP+ ++ F ++ + + +A L S
Sbjct: 198 VNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQNS 256
>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 545
Score = 39.9 bits (89), Expect = 7e-04
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 255 IRQVEYYFGDVNLHRDKFLQEQIKLD-DGWVPLEILTKFNRLAKLTEDTDVIANALNKS 428
+ QVEYYF D+NL L I D +G+VP+ ++ F ++ + + +A L S
Sbjct: 198 VNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQNS 256
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 255 IRQVEYYFGDVNLHRDKFLQEQI-KLDDGWVPLEILTKFNRLAKL 386
+ QVE+YF D NL D FL ++ K DG V L ++ F+R+ L
Sbjct: 14 LTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNL 58
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +3
Query: 255 IRQVEYYFGDVNLHRDKFLQEQI-KLDDGWVPLEILTKFNRL 377
+RQVE+YF D NL D FL++ + + +DG V L ++ F+++
Sbjct: 15 LRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKM 56
>At3g19090.1 68416.m02426 RNA-binding protein, putative similar to
RNA-binding protein homolog GB:AAF00075 GI:6449448 from
[Brassica napus]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 455
Score = 37.1 bits (82), Expect = 0.005
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +3
Query: 255 IRQVEYYFGDVNLHRDKFLQEQIKLD-DGWVPLEILTKFNRLAKLTEDTDVIANALNKST 431
++QVEY F D++L ++ + + I D +G+VP+ + ++ LT + +++ AL S+
Sbjct: 149 VKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSSS 208
>At5g15430.1 68418.m01806 calmodulin-binding protein-related has
weak similarity to calmodulin-binding proteins
Length = 478
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = +1
Query: 145 PEIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIFGKSN 270
P+ + ++DK +ET ++E+++ E E+E + ++++ N
Sbjct: 293 PKSEKSQDKGECIETEHEDESSQEEEDEEEEDENVSVSEDKN 334
>At3g13190.2 68416.m01651 myosin heavy chain-related contains weak
similarity to Myosin II heavy chain, non muscle
(Swiss-Prot:P05659) [Acanthamoeba castellanii]
Length = 316
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 118 SIKESHRVIPEIKMTE-DKEVTVETNGQEENAKTENSEDETELDIAIF 258
+++++H + EI+ E D + + + ++AKT+ S E EL IA+F
Sbjct: 137 NVEKAHSELKEIEQRERDHQAIEDLKKETKDAKTQLSLLEEELKIAVF 184
>At3g13190.1 68416.m01650 myosin heavy chain-related contains weak
similarity to Myosin II heavy chain, non muscle
(Swiss-Prot:P05659) [Acanthamoeba castellanii]
Length = 316
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 118 SIKESHRVIPEIKMTE-DKEVTVETNGQEENAKTENSEDETELDIAIF 258
+++++H + EI+ E D + + + ++AKT+ S E EL IA+F
Sbjct: 137 NVEKAHSELKEIEQRERDHQAIEDLKKETKDAKTQLSLLEEELKIAVF 184
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +1
Query: 103 NQKVFSIKESHRVIPEIKM------TEDKEVTVETNGQEENAKTENSEDETELDIAI 255
N + S+ E + + E+K E KEV E Q E KTE +++E+ ++ A+
Sbjct: 6 NAQTPSLSEQYHLEKEVKQDTSAKPVEVKEVAPEVTTQAEEVKTEQAKEESPVEEAV 62
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 127 ESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETE 240
E + E + E + T T+G E + EN+E++TE
Sbjct: 1817 EGENLAKEPAIDELMDATTTTDGDNEETEAENAEEKTE 1854
>At2g41540.2 68415.m05134 NAD-dependent glycerol-3-phosphate
dehydrogenase family protein weak similarity to
SP|P46919 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
(EC 1.1.1.94) {Bacillus subtilis}; contains Pfam profile
PF01210: NAD-dependent glycerol-3-phosphate
dehydrogenase
Length = 462
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 255 IRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANAL 419
++ VE GD L+ D+ L++ L+ PL L L + D D++ N L
Sbjct: 112 LKYVEARLGDRTLYADEILKDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVVNGL 166
>At2g41540.1 68415.m05133 NAD-dependent glycerol-3-phosphate
dehydrogenase family protein weak similarity to
SP|P46919 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
(EC 1.1.1.94) {Bacillus subtilis}; contains Pfam profile
PF01210: NAD-dependent glycerol-3-phosphate
dehydrogenase
Length = 462
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 255 IRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANAL 419
++ VE GD L+ D+ L++ L+ PL L L + D D++ N L
Sbjct: 112 LKYVEARLGDRTLYADEILKDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVVNGL 166
>At1g53440.1 68414.m06057 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1035
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -1
Query: 382 LARRLNFVRISNGTHPSSNFICSCR-NLSR-CRFTS 281
L R+ NFV S P+SN C C N S CR T+
Sbjct: 57 LDRKWNFVAESTSKLPTSNITCDCTFNASSVCRVTN 92
>At1g31410.1 68414.m03847 putrescine-binding periplasmic
protein-related similar to Chain A, Putrescine Receptor
(Potf) (GI:3891734) [Escherichia coli]; similar to Chain
C, Putrescine Receptor (Potf) (GI:3891736) [Escherichia
coli]; similar to Putrescine-binding periplasmic protein
precursor. (Swiss-Prot:P31133) [Escherichia coli]
Length = 524
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 130 SHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIFGKSNI 273
S R++P + + E+ ET EEN E++ E D + KS +
Sbjct: 66 SARILPPPIVVTENEINTETVAGEENLNEVEDEEKLEADFEAY-KSKV 112
>At5g22740.1 68418.m02656 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 534
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 210 RVLLLSIGFNSYLFVLGHFDFWNNTMRFF 124
R+ L +GF ++LFV G +DF + +F
Sbjct: 482 RLNTLELGFAAFLFVCGCYDFVHGKNNYF 510
>At3g13200.1 68416.m01652 Cwf15 / Cwc15 cell cycle control family
protein contains Pfam profile PF04889: Cwf15/Cwc15 cell
cycle control protein; similar to Cell cycle control
protein cwf15 (Swiss-Prot:P78794) [Schizosaccharomyces
pombe]
Length = 230
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +1
Query: 136 RVIPEIKMTEDKEVTVETNGQEENAKTENSEDETE 240
R+IP +D +V ++++ ++ ++ ED+TE
Sbjct: 102 RIIPRSVDADDSDVDIKSDDDSDDESDDDDEDDTE 136
>At2g23700.1 68415.m02830 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547
Length = 707
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 161 PRTKR*LLKPMDKRRTRKPKIQKTKPNWILRYSASRIL 274
P T + +K ++ R+RK ++ T N++ RY +R L
Sbjct: 668 PETMKKTIKKLNSGRSRKSIVEWTPHNFVFRYLIAREL 705
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 145 PEIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIFGKSN 270
P+ M +D EV++ NG+ + ++ + E+ L FG SN
Sbjct: 768 PKAMMKKDDEVSLPINGEYNEEENDDGDIESLLLPKRFGNSN 809
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 133 HRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIFGKSNII 276
HR+ PEI+ D EV EE K+E++ D+A+ G N++
Sbjct: 412 HRLFPEIERLIDGEVMTPAQVAEELMKSEDA------DVALEGLVNVL 453
>At4g04635.1 68417.m00678 hypothetical protein
Length = 284
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 121 IKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETE 240
++E H + E +D+E E G+EE + E E+E E
Sbjct: 208 VEEDHHI--EEYHVDDEEEEEEEEGEEEEGEGEEEEEEEE 245
>At2g30100.1 68415.m03663 ubiquitin family protein low similarity to
SP|Q9UQ13 Leucine-rich repeat protein SHOC-2
(Ras-binding protein Sur-8) {Homo sapiens}; contains
Pfam profiles PF00240: Ubiquitin family, PF01535: PPR
repeat, PF00560: Leucine Rich Repeat
Length = 897
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 412 FAMTSVSSVSLARRLNFVRISNGTHPSSNFICSCR-NLSRCRF 287
FA ++S++SL R L + ++ P+S IC+ + N S +F
Sbjct: 7 FASLTISTISLRRFLPRLHRNHSVKPNSRIICNLKLNYSAGKF 49
>At1g17790.1 68414.m02202 DNA-binding bromodomain-containing protein
similar to SP|P13709 Female sterile homeotic protein
(Fragile-chorion membrane protein) {Drosophila
melanogaster}; contains Pfam profile PF00439:
Bromodomain
Length = 487
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 103 NQKVFSIKESHRVIPEIK-MTEDKEVTVETNGQEENAKTENSEDETELDI 249
N + +++E R+ E++ + DK TV ++ N + +DE ELDI
Sbjct: 326 NNRDLTLEEKRRLSEELQDLPYDKLETVVQIIKKSNPELSQKDDEIELDI 375
>At5g05490.2 68418.m00593 cohesion family protein SYN1, splice
variant 1 (SYN1) identical to SYN1 splice variant 1
[Arabidopsis thaliana] GI:6453715
Length = 617
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 139 VIPEIKMTEDKEVTVETNGQEENAKTENSEDETELD 246
++PE + T DKE+ ET + N DE D
Sbjct: 514 MLPEKRFTADKEILFETASTQTQKPVCNQSDEMITD 549
>At5g05490.1 68418.m00592 cohesion family protein SYN1, splice
variant 1 (SYN1) identical to SYN1 splice variant 1
[Arabidopsis thaliana] GI:6453715
Length = 627
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 139 VIPEIKMTEDKEVTVETNGQEENAKTENSEDETELD 246
++PE + T DKE+ ET + N DE D
Sbjct: 524 MLPEKRFTADKEILFETASTQTQKPVCNQSDEMITD 559
>At4g36030.1 68417.m05129 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 670
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 49 LALPCIS*LRSLNKLVF*NQKVFSIKESHRVIPEIKMTEDKE 174
L +PC+ RS+ L + F E+H ++P +K+ +D E
Sbjct: 518 LLIPCV---RSIGNLA----RTFKSAETHMIVPLVKLLDDGE 552
>At4g00238.1 68417.m00030 DNA-binding storekeeper protein-related
contains Pfam PF04504: Protein of unknown function,
DUF573; similar to storekeeper protein GI:14268476
[Solanum tuberosum]
Length = 345
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 145 PEIKMTEDKEVTVETNGQEENAKTENSEDE 234
P K +D+ V V+ N +E+N K EDE
Sbjct: 237 PVKKKVKDESVLVKANSKEKNVKPLVKEDE 266
>At3g49410.1 68416.m05401 transcription factor-related contains weak
similarity to transcription factor IIIC63 (GI:5281316)
[Homo sapiens]
Length = 559
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 157 MTEDKEVTVETNGQEENA--KTENSEDETELDIA 252
+ E+ + V +G++EN + E+ E+E ELD+A
Sbjct: 446 VNENVDANVNEDGEDENLDDEDEDEEEEEELDMA 479
>At3g17450.1 68416.m02228 hAT dimerisation domain-containing protein
contains Pfam profile PF04937: Protein of unknown
function (DUF 659)
Length = 877
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 136 RVIPEIKMTEDKEVTVETNGQEENAKTENSEDETE 240
R++P+ +T +KE +G++ K ++ +DE E
Sbjct: 813 RLLPDWLVTSEKEEEEALHGEDRAEKEDHEDDEEE 847
>At2g07739.1 68415.m00990 expressed protein
Length = 199
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 171 FVLGHFDFWNNTMRFFN 121
++L HF FWNN FF+
Sbjct: 100 YLLFHFFFWNNHKHFFD 116
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,362,919
Number of Sequences: 28952
Number of extensions: 156995
Number of successful extensions: 708
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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