BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30307 (739 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical pr... 136 2e-32 AY077614-1|AAL79358.1| 550|Caenorhabditis elegans KSR-2a protein. 29 3.4 AL137227-4|CAB70239.2| 550|Caenorhabditis elegans Hypothetical ... 29 3.4 L10990-8|AAB59173.2| 223|Caenorhabditis elegans Hypothetical pr... 28 7.9 >Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical protein F54C9.5 protein. Length = 293 Score = 136 bits (328), Expect = 2e-32 Identities = 61/76 (80%), Positives = 68/76 (89%) Frame = +3 Query: 33 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 212 MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV Sbjct: 1 MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60 Query: 213 TCQVAYSRIEGDHICA 260 Q+AYS+IEGD + A Sbjct: 61 VAQLAYSKIEGDVVVA 76 Score = 100 bits (240), Expect = 9e-22 Identities = 43/72 (59%), Positives = 55/72 (76%) Frame = +1 Query: 517 MKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQ 696 MKG DGG+NVPHS RF G+D ESK++NAE HR I G HVA+YM L+++DED +KRQ Sbjct: 162 MKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQ 221 Query: 697 FSKYIKLGVTAD 732 FSK++ G+ AD Sbjct: 222 FSKFLAAGLNAD 233 Score = 73.7 bits (173), Expect = 1e-13 Identities = 38/83 (45%), Positives = 47/83 (56%) Frame = +2 Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433 + +AYSHELPRYG+KVGLTNYAAAY+TG +YNVE Sbjct: 75 VASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEE 134 Query: 434 VDNGPGAFRCYLDVGLARTTTGA 502 + F+ LD+GLARTTTG+ Sbjct: 135 -EGDRAPFKAVLDIGLARTTTGS 156 >AY077614-1|AAL79358.1| 550|Caenorhabditis elegans KSR-2a protein. Length = 550 Score = 29.1 bits (62), Expect = 3.4 Identities = 16/54 (29%), Positives = 25/54 (46%) Frame = -2 Query: 594 FGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAKPTSK*HLNAPGPLST 433 F + ++ SF R +T S SS+T + + TS +NAP P +T Sbjct: 12 FRYSVLTTSSFSSWRR-SSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTAT 64 >AL137227-4|CAB70239.2| 550|Caenorhabditis elegans Hypothetical protein F58D5.4a protein. Length = 550 Score = 29.1 bits (62), Expect = 3.4 Identities = 16/54 (29%), Positives = 25/54 (46%) Frame = -2 Query: 594 FGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAKPTSK*HLNAPGPLST 433 F + ++ SF R +T S SS+T + + TS +NAP P +T Sbjct: 12 FRYSVLTTSSFSSWRR-SSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTAT 64 >L10990-8|AAB59173.2| 223|Caenorhabditis elegans Hypothetical protein C30A5.3 protein. Length = 223 Score = 27.9 bits (59), Expect = 7.9 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 6/100 (6%) Frame = +1 Query: 430 TCRQWTRSI*MLFGCRLSTHHYWCSCLGAMKGAVDGGLNVPHSIKRFPG----YDAESKK 597 TC+Q T + +F C + C + + +DG + +S K FP + K Sbjct: 96 TCQQMTATEQWIFLCAAHKNPNECPAIDYTRHTLDGAATLLNSNKYFPSRVNIKEISISK 155 Query: 598 FNAEVHRAHIFGLHVAEYMRSL--EQDDEDSFKRQFSKYI 711 + R + H + R L E ++E ++F+ Y+ Sbjct: 156 LGSVARRVYRIFSHAFFHHRKLFDEFENETHLCKRFTTYV 195 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,846,026 Number of Sequences: 27780 Number of extensions: 356739 Number of successful extensions: 840 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 790 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 839 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1735436670 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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