Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30305
         (441 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39521| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.97 
SB_55658| Best HMM Match : Calx-beta (HMM E-Value=0.05)                27   9.1  
SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)                   27   9.1  
SB_37520| Best HMM Match : Calx-beta (HMM E-Value=0.023)               27   9.1  
SB_15750| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_15683| Best HMM Match : Y_phosphatase (HMM E-Value=0)               27   9.1  
SB_50735| Best HMM Match : Calx-beta (HMM E-Value=0.023)               27   9.1  
SB_40013| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_29908| Best HMM Match : Calx-beta (HMM E-Value=2.3e-08)             27   9.1  
SB_29729| Best HMM Match : Ank (HMM E-Value=0.0055)                    27   9.1  

>SB_39521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 366 HHTSYINFNLIVNNLSTFYLTLHITTLSVLII 271
           HH  YI   +I+ ++  FYLT+ +T + ++I+
Sbjct: 33  HHHHYIIIIIILTSIIHFYLTVTVTVIVIVIV 64


>SB_55658| Best HMM Match : Calx-beta (HMM E-Value=0.05)
          Length = 203

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 360 TSYINFNLIVNNLSTFYLTLHITTLSV 280
           T YI  + +V    TFYLTL+IT  +V
Sbjct: 110 TVYITDDFVVEPNKTFYLTLNITDPAV 136


>SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)
          Length = 636

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -1

Query: 396 NRRRAEHKMNHHTSYINFNLIVNNLSTFYLTLHITTLSVLII**NRKIVI 247
           +R+ +EH  N+H   +   +I+  +    +T+ IT   + II  +  I+I
Sbjct: 72  SRKSSEHNYNNHQHIMVITIIIITIIIMIITITITINHITIINNHINIII 121


>SB_37520| Best HMM Match : Calx-beta (HMM E-Value=0.023)
          Length = 139

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 360 TSYINFNLIVNNLSTFYLTLHITTLSV 280
           T YI  + +V    TFYLTL+IT  +V
Sbjct: 95  TVYITDDFVVEPNKTFYLTLNITDPAV 121


>SB_15750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 360 TSYINFNLIVNNLSTFYLTLHITTLSV 280
           T YI  + +V    TFYLTL+IT  +V
Sbjct: 294 TVYITDDFVVEPNKTFYLTLNITDPAV 320


>SB_15683| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 753

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 360 TSYINFNLIVNNLSTFYLTLHITTLSV 280
           T YI  + +V    TFYLTL+IT  +V
Sbjct: 245 TVYITDDFVVEPNKTFYLTLNITDPAV 271


>SB_50735| Best HMM Match : Calx-beta (HMM E-Value=0.023)
          Length = 141

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 360 TSYINFNLIVNNLSTFYLTLHITTLSV 280
           T YI  + +V    TFYLTL+IT  +V
Sbjct: 95  TVYITDDFVVEPNKTFYLTLNITDPAV 121


>SB_40013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 360 TSYINFNLIVNNLSTFYLTLHITTLSV 280
           T YI  + +V    TFYLTL+IT  +V
Sbjct: 268 TVYITDDFVVEPNKTFYLTLNITDPAV 294


>SB_29908| Best HMM Match : Calx-beta (HMM E-Value=2.3e-08)
          Length = 549

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 360 TSYINFNLIVNNLSTFYLTLHITTLSV 280
           T YI  + +V    TFYLTL+IT  +V
Sbjct: 505 TVYITDDFVVEPNKTFYLTLNITDPAV 531


>SB_29729| Best HMM Match : Ank (HMM E-Value=0.0055)
          Length = 222

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 360 TSYINFNLIVNNLSTFYLTLHITTLSV 280
           T YI  + +V    TFYLTL+IT  +V
Sbjct: 34  TVYITDDFVVEPNKTFYLTLNITDPAV 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,330,225
Number of Sequences: 59808
Number of extensions: 185915
Number of successful extensions: 324
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)